Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32095
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    29   0.62 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   1.9  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   7.6  

>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 42  MASQTQ-GIQQLLAAEKRAAEKVSEARXAKSETPK 143
           M++QT  GIQQLL AEK A   V +AR  +++  K
Sbjct: 1   MSAQTNSGIQQLLEAEKVARNIVEKARQHRTQRLK 35


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 229 MGTREGVAAKIDAETKVKIEEMNKMVQTQKE 321
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 QGKRKAKRLKQAKEEAQDE 171
           +GK K K LK+ K E +DE
Sbjct: 215 KGKEKQKELKKGKREKKDE 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,263
Number of Sequences: 5004
Number of extensions: 28141
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)