Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32095
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     33   0.21 
05_05_0321 + 24091997-24092530                                         30   1.5  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    29   2.5  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    28   4.4  

>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 39  DMASQTQGIQQLLAAEKRAAEKVSEARXAKS 131
           D   +  GIQQLLAAE+ A + V+ AR AKS
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKS 32



 Score = 32.3 bits (70), Expect = 0.27
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +1

Query: 127 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKIDAETKVKIEEMNKMV 306
           K+ RL+QAKEEA+ E+               A+  G       +++ ET  KI ++ +  
Sbjct: 31  KSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDSGANVKRLEQETAEKIAQLKQQA 90

Query: 307 QTQKEAXIKDVLNLVYDIK 363
            +     I+ +L  V  +K
Sbjct: 91  ASISPEVIQMLLRHVTTVK 109


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 47  ESDPRNPTASSC*KTRCGESQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 226
           E+    P++SS  +    E+   +  +++ A +   RRL+ +   +  S  GS   +  +
Sbjct: 78  ENGQARPSSSSE-QEEAAEAASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLLN 136

Query: 227 TWVPGKVLRPRSMPRP 274
            +VPG + R  + PRP
Sbjct: 137 FYVPGLLTRSMTTPRP 152


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 75  LAAEKRAAEKVSEARXAKSETPKAGQGGGSR*S*KVQTGA*KAVQRI 215
           LAA +R++   S A  A ++ P  G+GGG     K   GA  A +R+
Sbjct: 5   LAASRRSSSSSSVAAAAAAKRPAVGEGGGGG-GGKAAAGAAAAKKRV 50


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 187 VCTFQLHLEPPPWPALG 137
           V  FQ  + PPPWPA G
Sbjct: 231 VAAFQSRMMPPPWPARG 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,530
Number of Sequences: 37544
Number of extensions: 189226
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)