Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32095
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   8.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 238 WYPCAWLQIL*TAFHAPVC 182
           +YPC W +I  T     +C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 238 WYPCAWLQIL*TAFHAPVC 182
           +YPC W +I  T     +C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  GESDPRNPTASSC*KTRCGES 106
           GE+ PR+P AS     +C  +
Sbjct: 734 GEASPRSPNASPSPAEQCAST 754


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 135 PDMYRLRPPPNPRFGP 150


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 383 PDMYRLRPPPNPRFGP 398


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 368 PDMYRLRPPPNPRFGP 383


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 349 PDSIRL*XPPPSVFGP 302
           PD  RL  PP   FGP
Sbjct: 384 PDMYRLRPPPNPRFGP 399


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 328 IKDVLNLVYDIKPELHMNYRLN*AKLL 408
           I ++   +YDI PE+ +   L  AK+L
Sbjct: 566 IDNIKKEIYDILPEVDVEEILGEAKVL 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,587
Number of Sequences: 438
Number of extensions: 1904
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)