Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32088
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   146   2e-36
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.8  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.7  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  146 bits (355), Expect = 2e-36
 Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
 Frame = +3

Query: 138 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLLYXLDELNNPLITLKSIGHQ*Y*RYEYSD 317
           ++   G I+E I T+IPA  LI +ALPS +LLY LDE+  P +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 318 F-----NNIEFDSYIIPXNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIXS 482
           F       + FDSY++P  +++    R L+VD               T+ DVIHS  + S
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 483 LGVKVDANPGRLNQTNFFINRPXIFFGQCSEICGANHSFIPIVIESXSI 629
           LG+K D  P RLNQ +  I+R  +F+GQCSE+CG  HS +PIV++  S+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSL 237


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 201 IFIALPS--LRLLYXLDELNNPLITLKSIGHQ*Y*RYEYSDFNNIEFDSYIIPXNEIKNN 374
           +F +LP   LRL++ L   +N  +T +S+ H+   R     F  I+F   ++P + I + 
Sbjct: 36  VFESLPLEVLRLIFLLSNNSNLAVTSRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSI 95

Query: 375 EFRLL 389
           +  LL
Sbjct: 96  QRGLL 100


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 402 DYLHLIVGIHYFLFHXMGLY 343
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,219
Number of Sequences: 5004
Number of extensions: 27705
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)