Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32086
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   111   9e-26
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.5  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    27   3.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   5.9  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   7.8  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   7.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.8  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  111 bits (267), Expect = 9e-26
 Identities = 60/113 (53%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
 Frame = -2

Query: 593 IYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXX 414
           I+NYYKKFGYKT VMGASFRN GEI+ELAG D LTISP LL++L +S             
Sbjct: 208 IFNYYKKFGYKTIVMGASFRNVGEIKELAGVDFLTISPALLEQLNNSTDAVPKKLDASKA 267

Query: 413 XLNDIEKIS-LT-EPEFRWHLNEDQMATDKLSDGIRRFAADTRKLESLIKTLL 261
              ++EK+S LT EP+FR+  N D+MA  KLS GI  FA D   L +++K  L
Sbjct: 268 SSLNLEKVSYLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADTLRTILKAKL 320



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -1

Query: 696 LISPFVGRILDWYVEHTKKTYEGKEDPGVVSVT 598
           LISPFVGRILD+Y     + Y  +EDPGVVSV+
Sbjct: 174 LISPFVGRILDFYKAKNNRDYTAQEDPGVVSVS 206


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 189 ENVFINHSFTYHISISKVNRLLISKKRFDERFQLPSISSKSSYTI*EFVSSHL 347
           EN+ I HSF  H+S + +   + + + F ++F+LP  + K    + +F   ++
Sbjct: 760 ENIAIMHSFVDHMSFNDI-PFVNALRSFLQKFRLPGEAQKIDRFMLKFAEKYI 811


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 398 EKISLTEPEFRWHLNEDQMA-----TDKLSDGIRRFAADTRKL 285
           E++ L +PE  WH   D++A        L+  + +FA D + L
Sbjct: 217 EELGLLQPEIAWHTERDRIAEAGCFLGMLTGTLAKFATDIKLL 259


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = -2

Query: 389  SLTEPEFRWHLNEDQMATDKLSDGIRRFA--------ADTRKLESLIKTLLANK 252
            +L +PEF   LNEDQ+   K       ++          T  + SLI++LLA K
Sbjct: 923  ALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKK 976


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 382 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 465
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 567 TKLLVIVVNFLSRKLLRGLPCPH--KSSLYVQHTNPI 671
           TKLL+ V+ +    +L    CPH    +  VQH   I
Sbjct: 47  TKLLLTVIPYFREVVLMSFECPHCGFKNAQVQHAETI 83


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 561 LVTKLLVIVVNFLSRKLLRGLPCPHKSSLYVQHTNPIYDQQMGIL 695
           ++  + V+  N L+     GL CP +    VQH   +Y    G L
Sbjct: 458 VINSMHVLATNILTEHKYVGLVCPTRRIAAVQHNIGLYVVDYGKL 502


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 596 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 453
           +I+    + G+   + GA    +G I  + G D+L   P+L+  L +S
Sbjct: 701 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,809
Number of Sequences: 5004
Number of extensions: 51514
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)