Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32086
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    44   2e-04
01_04_0074 + 15760667-15761815                                         30   2.0  
01_06_0519 - 29993977-29994182,29994572-29994632                       29   4.7  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -2

Query: 599 QKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 453
           +K+Y Y  K GYKT++M A+ RN  ++  L G D +    K+LQ L  S
Sbjct: 275 KKVYAYIHKNGYKTKLMAAAIRNKQDVFSLLGIDYIIAPLKILQSLEES 323


>01_04_0074 + 15760667-15761815
          Length = 382

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 189 HVGIYLMYEN*IFSSTTFIWIKFLGFYGFVILLIWDHVVDH 67
           H G++++ E  IFSS  F WI    F   ++++   HV+ H
Sbjct: 171 HSGVFVITEVEIFSSEDFTWIADDAFETEIMMISMPHVLLH 211


>01_06_0519 - 29993977-29994182,29994572-29994632
          Length = 88

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 370 NSGSVSDIFSMSFKAANFGSRTFFSGLSLLANSCSNLGLI 489
           NSG ++D+ +   +    G+R F S L + +N  SNL ++
Sbjct: 32  NSGRITDVGARGPEKGEAGARGFLSPLPVSSNPDSNLSMV 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,831
Number of Sequences: 37544
Number of extensions: 279721
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)