Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32086
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...   127   9e-30
AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   127   9e-30
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...    99   3e-21
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    28   7.3  

>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score =  127 bits (306), Expect = 9e-30
 Identities = 61/109 (55%), Positives = 75/109 (68%)
 Frame = -2

Query: 596 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXX 417
           +I+NYYKK+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+             
Sbjct: 54  RIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSH 113

Query: 416 XXLNDIEKISLTEPEFRWHLNEDQMATDKLSDGIRRFAADTRKLESLIK 270
               D+ K+S+ E  FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 114 AKTLDLPKVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 162



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 24/35 (68%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -1

Query: 696 LISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTK 595
           LISPFVGRI+DW+V++T +K Y  K+DPGVVSVT+
Sbjct: 20  LISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTR 54


>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  127 bits (306), Expect = 9e-30
 Identities = 61/109 (55%), Positives = 75/109 (68%)
 Frame = -2

Query: 596 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXX 417
           +I+NYYKK+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+             
Sbjct: 208 RIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSH 267

Query: 416 XXLNDIEKISLTEPEFRWHLNEDQMATDKLSDGIRRFAADTRKLESLIK 270
               D+ K+S+ E  FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 268 AKTLDLPKVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 316



 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 24/35 (68%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
 Frame = -1

Query: 696 LISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTK 595
           LISPFVGRI+DW+V++T +K Y  K+DPGVVSVT+
Sbjct: 174 LISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTR 208


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 49/94 (52%), Positives = 61/94 (64%)
 Frame = -2

Query: 551 MGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIEKISLTEPE 372
           M ASFRNT EI+ L GCDLLTISP LL++LA+                 D+ K+S+ E  
Sbjct: 1   MAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEFAPVVLSTSHAKTLDLPKVSIDEKA 60

Query: 371 FRWHLNEDQMATDKLSDGIRRFAADTRKLESLIK 270
           FRW LN+D MAT+KL++GIR FA D R LE LI+
Sbjct: 61  FRWALNDDAMATEKLAEGIRNFAKDARTLEKLIE 94


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +1

Query: 349 SSLRCQRNSGSVSDI-----FSMSFKAANFGSRTFFSGLSLLANSCSNLGLIVSKSQPAN 513
           SS R QR+  SV +      + +   A + G+R F   L  L+   +N+  ++ +S+P  
Sbjct: 5   SSERVQRSVRSVVETKNNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLIHESEPVV 64

Query: 514 SRISPVL 534
            +++P L
Sbjct: 65  KKVTPGL 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,923
Number of Sequences: 27780
Number of extensions: 276141
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)