Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32084
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    79   5e-16
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.18 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   5.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.9  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
 Frame = +2

Query: 80  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 259
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I         
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 260 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 439
                  I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 440 ALXQLMEPTVTIRVRXTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSTDTCGGI 616
           A+  L EP   +  R  D  +V++ + KA    K+K    D  L  +T++FL+    GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182

Query: 617 EL 622
            L
Sbjct: 183 VL 184


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 608 HRCRSTKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 489
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
 Frame = +2

Query: 356  LDEARKRLAEVPKDTK-LYSELLVTL-IVQA--LXQLMEPTVTIRVRXT-----DKALVE 508
            ++EA K      KD K L   +L T+ + Q+  +   +E T+TI V        DK   E
Sbjct: 745  VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804

Query: 509  SLLGKAQTDYKNKIKKDVVLKVDTENFLSTDTC 607
            + LGK   D  N  + DV+  V  E   +TD C
Sbjct: 805  NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 338 DHVRNVLDEARKRLAEVPKDTKLYSELL 421
           D   N L+EA+KRLA +P D    ++ L
Sbjct: 181 DDDTNGLEEAKKRLAGIPSDEVALTQAL 208


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 79  RHGCCLFLTPLTRKTADIE 23
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 296 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 403
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,884
Number of Sequences: 5004
Number of extensions: 38005
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)