Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32079
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.5  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 304 YTYLSKQEKMYFSLNYV 254
           Y Y +  +K+Y+++NY+
Sbjct: 98  YNYNNNCKKLYYNINYI 114


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 249 GPIKLSNRYSCKGFRFKAKNSTKKLLPPVGK 157
           G IK   + S  G +++A       LPPVGK
Sbjct: 30  GAIKGYYKISGNGKQYEAYEGIPYALPPVGK 60


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 249 GPIKLSNRYSCKGFRFKAKNSTKKLLPPVGK 157
           G IK   + S  G +++A       LPPVGK
Sbjct: 30  GAIKGYYKISGNGKQYEAYEGIPYALPPVGK 60


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 298 YLSKQEKMYFSLNYV 254
           Y +  +K+Y+++NY+
Sbjct: 100 YCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 298 YLSKQEKMYFSLNYV 254
           Y +  +K+Y+++NY+
Sbjct: 100 YCNNYKKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,693
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)