Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32078
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   2.6  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   6.1  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 189 DHVFYFILINNFKKCFLCCKII----MECFLCNSLCEN 88
           DHVF+   I    +C++C + +    + CF C+  C +
Sbjct: 697 DHVFHVNAIFKPSRCYICSESVWGSELRCFHCSISCHS 734


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 93  ENSTFREKREKVKKFNKDFWLSCKTFLS 10
           +N  F++  EK+K+ NK  +   K+FLS
Sbjct: 186 QNENFKDDYEKIKEENKRLYKERKSFLS 213


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 159 NFKKCFLCCKIIMECF 112
           N + CFL C ++ +CF
Sbjct: 511 NLQSCFLLCSLVEQCF 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,061
Number of Sequences: 5004
Number of extensions: 47058
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)