Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32077
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 29 0.61
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 3.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.3
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 25 7.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 10.0
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 10.0
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 10.0
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 25 10.0
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 10.0
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.61
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 218 IDGEVNTHQCRDRSSCWSWLWRLY 289
I G++ H R + +C WLW LY
Sbjct: 269 IPGDIRPHLFRYQVTCVQWLWELY 292
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 405 YLNHL*HNTAVCTWVLALKMHILRFLEEVYVFSRLFC 295
Y N L +A+C W+ + H L+F V +S +FC
Sbjct: 329 YTNLLNLRSAICDWLKFSRYHYLKFFTFVEAYS-VFC 364
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 99 DRLIKMWRSTLTLLRKIVVPSLKENLQQSKTLFSTKSR 212
D +IK +S L+L K+VVPS KE K L R
Sbjct: 560 DNVIKE-KSPLSLTPKVVVPSHKETYTDEKKLIDELDR 596
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 291 HYKINAKKRTLPQENEEYAFLKQAPKYTPQYCVINDSDTSNLSL 422
H K NA + L +EN LK APK T ++ D N S+
Sbjct: 1678 HPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSV 1721
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 408 SNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAV 521
SN + +F CPFC + L Y+ E+D +
Sbjct: 14 SNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKI 51
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 135 LLRKIVVPSLKENLQQSKTLFSTKSRPRSTVRLTLI 242
L+ + ++PSL +K L+S PRS+ RL +
Sbjct: 125 LIHQNLIPSLFSVSNSTKLLYSASLLPRSSERLVTL 160
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 120 RSTLTLLRKIVVPSLKENLQQSKTLFSTKSRPRST 224
R +L RK+ P L+ + +S +LFS K RP S+
Sbjct: 345 REPSSLSRKLAPPFLRTHKAKSNSLFSMK-RPSSS 378
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 339 LRFLEEVYVFSRLFCNVYNLHSQLQQELLS 250
+R +E + VF + N Y L+ ELLS
Sbjct: 348 IRHIEHLQVFRQAMVNYYRLYEDSLSELLS 377
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 387 HNTAVCTWVLALKMHILRFLEEVYVFSRLFCNVYNLHSQLQQ 262
H ++ + V +L + IL + Y RLF N+Y Q+QQ
Sbjct: 174 HKNSIYSIVSSLAI-ILGLVGLPYAIIRLFKNIYEKEKQIQQ 214
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 372 TPQYCVINDSDTSNLSLVLFQYRTCPFC 455
TP + ++TS +V +R+CP C
Sbjct: 245 TPTAAEVKAAETSGTKIVKCGHRSCPIC 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,899
Number of Sequences: 5004
Number of extensions: 49371
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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