Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32077
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0013 + 9393423-9393747,9396577-9396657,9397491-9397594,939...    47   3e-09
02_04_0627 + 24585712-24585845,24586415-24586503,24587039-245871...    38   0.006
04_04_0458 + 25370542-25370597,25371591-25371679,25372687-253727...    34   0.090
10_08_0721 - 20103490-20103867,20103892-20104284                       33   0.21 
01_05_0336 - 21111048-21111800                                         33   0.28 
10_08_0706 + 20034534-20034860,20034988-20035368                       31   0.64 
01_07_0182 + 41838805-41839152,41839230-41839610                       31   0.64 
10_08_0720 - 20100406-20100798,20100917-20101249                       31   0.84 
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    25   1.8  
10_08_0719 + 20097639-20097968,20098048-20098410                       29   2.6  
10_08_0707 + 20037301-20037633,20037862-20038248                       29   2.6  
10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665     29   2.6  
10_08_0708 + 20040482-20040808,20040906-20041280                       29   4.5  
10_08_0692 + 19918746-19919072,19919419-19919781,19919841-199199...    28   5.9  

>04_03_0013 +
           9393423-9393747,9396577-9396657,9397491-9397594,
           9397777-9397832,9398713-9398807,9400900-9401067,
           9401181-9401341
          Length = 329

 Score = 46.8 bits (106), Expect(2) = 3e-09
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = +3

Query: 465 RAYLDARGISYEVVEVDAVLRQAIKWSGYKKVPIVLAKV 581
           +A+LD   I Y+VVEV+ + ++ IKWS YKKVPI++ +V
Sbjct: 135 QAFLDYHDIPYKVVEVNPLSKKEIKWSEYKKVPILMQRV 173



 Score = 32.3 bits (70), Expect(2) = 3e-09
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 417 SLVLFQYRTCPFCCKVRAYL 476
           ++VL+QY+ CPFC KVR  L
Sbjct: 92  NVVLYQYQACPFCNKVRGKL 111


>02_04_0627 +
           24585712-24585845,24586415-24586503,24587039-24587137,
           24587326-24587405
          Length = 133

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +3

Query: 420 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVD-----AVLRQAI-KWSGYKKVPIVLAK 578
           +V+F    CPFC +V+  L     SY+ VE+D     + L+ A+  W+G + VP V  K
Sbjct: 41  VVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIK 99


>04_04_0458 +
           25370542-25370597,25371591-25371679,25372687-25372785,
           25372960-25373054
          Length = 112

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
 Frame = +3

Query: 420 LVLFQYRTCPFCCKVRAYLDARGISYEVVEVD-----AVLRQAI-KWSGYKKVPIV 569
           +V++    CPFC +V+   +  G +++ +E+D     + L+ A+ +W+G + VP V
Sbjct: 15  VVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNV 70


>10_08_0721 - 20103490-20103867,20103892-20104284
          Length = 256

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           PF  +VR  L+ +G+SYE VE D   +  +  +    +KKVP+++
Sbjct: 17  PFAIRVRIALNIKGVSYEYVEEDIFNKSELLLTSNPVHKKVPVLI 61


>01_05_0336 - 21111048-21111800
          Length = 250

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           PF  +VR  L+ +G+SYE VEVD   +  +  +    + KVP++L
Sbjct: 24  PFLVRVRLALNLKGLSYEYVEVDLAGKSDLLLAANPVHAKVPVLL 68


>10_08_0706 + 20034534-20034860,20034988-20035368
          Length = 235

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 441 TCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           T PF  +V+  L  +G+SYE  E D   +  +  S    +KKVP+++
Sbjct: 15  TSPFALRVKLALSFKGLSYEYAEEDLSNKSELLLSSNPVHKKVPVLI 61


>01_07_0182 + 41838805-41839152,41839230-41839610
          Length = 242

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVLAKVDGGYQQLLDSAA 617
           PF  +V A L  +G++YE++  D   +  +  +    +KKVP++L   DGG + + +S  
Sbjct: 14  PFVHRVEAALQLKGVAYELIHEDLENKSNLLLASNPVHKKVPVLL---DGG-RAICESLV 69

Query: 618 IISILE 635
           I+  ++
Sbjct: 70  IVEYVD 75


>10_08_0720 - 20100406-20100798,20100917-20101249
          Length = 241

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 396 DSDTSNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPI 566
           D D   L LV+      PF  +V   L  +G+SYE +E D   +  +  S    +KK+P+
Sbjct: 5   DDDVKVLGLVM-----SPFAIRVCIALKLKGVSYEYIEEDLANKSELLLSSNPVHKKIPV 59

Query: 567 VL 572
           ++
Sbjct: 60  LI 61


>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 25.4 bits (53), Expect(2) = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 549 YKKVPIVLAKVDGGYQQLLDSAAIISILETYLLDK 653
           Y+ +P     + GGY +L     IISI+   L  K
Sbjct: 598 YRTIPFAWNLITGGYVELTIPGVIISIVGLLLFGK 632



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 417 SLVLFQYRTCPF 452
           +L+LF YRT PF
Sbjct: 592 NLILFSYRTIPF 603


>10_08_0719 + 20097639-20097968,20098048-20098410
          Length = 230

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 408 SNLSLVLFQYRTCPFCCKVRAYLDARGISYEVVEVDAVLRQ---AIKWSGYKKVPIVL 572
           +N  L L      PF  +VR  L  +G+SYE VE D   +     +    +KKVP+++
Sbjct: 5   NNHELKLLGTWPSPFVVRVRLALGLKGLSYEYVEQDIRDKSELLVVSNPVHKKVPVLI 62


>10_08_0707 + 20037301-20037633,20037862-20038248
          Length = 239

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           PF  +V   L  +G+SYE V+ D V +  +  +    +KK+P+++
Sbjct: 17  PFVTRVELALGLKGLSYEYVKQDLVNKSELLLASNPVHKKIPVLI 61


>10_08_0700 + 19969616-19969942,19970044-19970422,19970562-19970665
          Length = 269

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVLAK 578
           PF  + +  L  +G+SY+ VE D   +  +  S    +KKVP+++ K
Sbjct: 17  PFALRAKLALSFKGLSYDYVEEDFKNKSDVLLSSNPVHKKVPVLIHK 63


>10_08_0708 + 20040482-20040808,20040906-20041280
          Length = 233

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           PF  + +  L  +G+SYE VE D   +  +  +    +KKVP+++
Sbjct: 17  PFALRAKLALSFKGLSYEYVEEDLKNKSELLLTSNPVHKKVPVLI 61


>10_08_0692 +
           19918746-19919072,19919419-19919781,19919841-19919977,
           19920298-19920304
          Length = 277

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 447 PFCCKVRAYLDARGISYEVVEVDAVLRQAIKWSG---YKKVPIVL 572
           PF  + +  L  +G+SY+ VE D   +  +  S    +KKVP+++
Sbjct: 17  PFALRAKLALSFKGLSYDYVEEDFKNKSELLLSSNPVHKKVPVLI 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,814
Number of Sequences: 37544
Number of extensions: 274637
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)