Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32077
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 570 LAKVDGGYQQLLDSAAIISILETYLLDKKSQLT 668
           L+KV   + QL+D+   +  +   L+D+ +QLT
Sbjct: 358 LSKVIDQHSQLIDTLENVLAIVDRLMDETNQLT 390


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 611 TIK*LLVPSIHFSEDNRHFFITRPLDCLTKY 519
           ++K L+      SE+N H   ++ + C++KY
Sbjct: 96  SVKQLVSDCSTISEENPHLKASKLVQCVSKY 126


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 424 FCSNTEPVHFAVKSVPILMPV 486
           FC+ T+P+ + VK  P  M V
Sbjct: 140 FCAITKPLKYGVKRTPRRMIV 160


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 4  YFLLKWLNFQSS 39
          +F L+W N+QSS
Sbjct: 6  HFCLRWNNYQSS 17


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 278 WRLYTLQNKREKTYTSSRKRRICIFK 355
           W+ +  +  R+K  TS + RR   FK
Sbjct: 422 WKTHVWKKGRDKKSTSKKPRRKFHFK 447


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 4  YFLLKWLNFQSS 39
          +F L+W N+QSS
Sbjct: 6  HFCLRWNNYQSS 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,184
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)