Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32076
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 28 0.80
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 27 1.8
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 27 1.8
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 27 2.4
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 3.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 5.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 9.8
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 25 9.8
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.80
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 290 GLDRIRSHISENHPLADFALDTCSKLVSFKPL---SELLKKEYDVILTENFNSDCM 448
G DR H+S P DF+ +T +V F L +++++ D E + C+
Sbjct: 602 GFDRAIEHLSSFDPRRDFSSNTVEPVVKFLELINVGDMIQQMMDSFFNEEMSPICV 657
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 414 TSYSFLSSSDKGLKLTNFEHVSKAKSAN 331
TSYS L +D+G+++T+ + +S K+AN
Sbjct: 8 TSYSALILADEGIEITSDKLLSLTKAAN 35
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 414 TSYSFLSSSDKGLKLTNFEHVSKAKSAN 331
TSYS L +D+G+++T+ + +S K+AN
Sbjct: 8 TSYSALILADEGIEITSDKLLSLTKAAN 35
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 21 TFCSCL*KMCCRLEFSVCSLISEKVIKWHTILCY 122
TF + MC +L F +C L+ WHTI Y
Sbjct: 241 TFLGPILVMCAKLGFYICRLLGS---PWHTISPY 271
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +2
Query: 233 VESINMSIYEGHNVFLRLTGLDRIRSHISENHPL---ADFALDTCSKLVSFKPLSELLKK 403
V+ N+S YEGHNVF ++G+D + S+ S+N L DFAL + +
Sbjct: 383 VQPSNVS-YEGHNVF--ISGIDVMTSN-SQNVFLEKNKDFALTSSFDWTVRLWQCSPSRN 438
Query: 404 EYDVILTENFNSDCMLGLANVYGQKAPIVYLSSCTA 511
+++++ + + + ++ + KA + + C +
Sbjct: 439 QHELVPSNDLDEQVIINSCKTFTHKAMVFDVKWCVS 474
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 549 LSVTPNRSRAQYIAVHDDR*TIGAFCP*TFARPSIQSLLKFSVNITSYSFLSSSDKGL 376
++VTP+ A + D T G +CP +A + ++ N TSY++ S GL
Sbjct: 82 VAVTPDEGNAGWAMSPDQYCTAGTWCP--YACEPGYLMGQWDPNATSYTYPESMYGGL 137
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 89 KSHQMAYDPLLRRLAERGHDVTAVTFFPLKNPPEHYRAVSLEGLTEIRVESI 244
K+ D L + GH + FP Y +V LE L + +VE+I
Sbjct: 59 KNFSTLEDKTYSPLFKAGHTTWRIVLFPKGCNQTEYASVFLEYLPQCKVEAI 110
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 227 IRVESINM--SIYEGHNVFLRLTGLDRIRSHISENH 328
I +E+ N+ ++Y+ +F LTG D +RS I H
Sbjct: 113 IAIETTNVPDTVYKKEFLFGLLTGTDDVRSFIVAGH 148
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 465 TFARPSIQSLLKFSVNITSYSFLSSSDKGLKLTNFEHVSKAKSA 334
T + PSI S + SV+ +S++ LSSS L++ S S+
Sbjct: 147 TTSIPSISSTISSSVSTSSFTSLSSSGFSTVLSSTNTTSALPSS 190
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 284 LTGLDRIRSHISENHPLADFALDT----CSKLVSFKPLSELLKKEYDVILTENFNSDCML 451
L G+D I PL D ++ C +V LS L + ILT + S+C+L
Sbjct: 68 LDGVDAIAVACYSPTPLVDMIRESFALPCMGIVQASVLSALSVGQRIGILTSTYRSECLL 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,906
Number of Sequences: 5004
Number of extensions: 49549
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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