Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32074
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 155 3e-39
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 140 1e-34
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 99 4e-22
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 80 2e-16
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 3e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 3e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 37 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 35 0.006
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 35 0.008
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 33 0.032
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 32 0.042
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 31 0.073
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.13
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.13
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.22
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.22
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 29 0.51
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.51
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.2
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 1.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 4.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 6.3
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 6.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 6.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 8.4
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 8.4
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 155 bits (377), Expect = 3e-39
Identities = 71/108 (65%), Positives = 86/108 (79%)
Frame = +1
Query: 175 FRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 354
F+ L G REMRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNVE V Y+N+ F VWD+
Sbjct: 9 FQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDV 68
Query: 355 GGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEEL 498
GGQ IRP WR Y+ NT II+VVDS DR+RI + +EL ML E+EL
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDEL 116
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 140 bits (338), Expect = 1e-34
Identities = 64/113 (56%), Positives = 82/113 (72%)
Frame = +1
Query: 160 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 339
G F L +EMRIL+LGLD AGKTTILYKL++ + V TIPT+GFNVE VTYKN+KF
Sbjct: 8 GFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKF 67
Query: 340 QVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEEL 498
VWD+GGQ IRP WR Y+ T +I+VVDSAD +RI ++ EL ++ + E+
Sbjct: 68 NVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREM 120
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 98.7 bits (235), Expect = 4e-22
Identities = 47/104 (45%), Positives = 70/104 (67%)
Frame = +1
Query: 187 LGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQT 366
L RE+R+L+LGLD AGKTTIL L +V PT GF + + + L+F +WD+GGQ
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71
Query: 367 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEEL 498
++R +W+ Y+ +T+AII+VVDS D R+ ++ L +L EE+L
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKL 115
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/101 (38%), Positives = 59/101 (58%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIR 375
+ ++L LGLD AGKTT+L+ L+ + PT+ E++ N++F +DLGG R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 376 PYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEEL 498
WR Y+ + I+Y+VD D +R+ SK EL +L EEL
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEEL 119
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 46.0 bits (104), Expect = 3e-06
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVEQVTY----KNLKFQVWDLGGQTS 369
++L++G G GK+ +L + + I TIG + + T+ K +K Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 370 IRPYWRCYYGNTDAIIYVVDSADRD 444
R YY II V D D+D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQD 94
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 202 MRILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQT 366
+++L++G G GK+ +L + + I TIG + + ++ K +K Q+WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 367 SIRPYWRCYYGNTDAIIYVVDSADR 441
R YY I+ + D D+
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDK 94
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.1 bits (82), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = +1
Query: 202 MRILILGLDGAGKTTILYKL-------QVGEVV-----TTIPTIGFNVEQVTYKNLKFQV 345
++I++ G G GK+ +L + QV V + I ++G +Q K +K Q+
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQI 66
Query: 346 WDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRD 444
WD GQ R R YY + V D ++D
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD 99
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.006
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 292 TIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDR 447
T+G + T +L+ +++D+GGQ + R W + N ++II+ V D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 34.7 bits (76), Expect = 0.008
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEV-VTTIPTIG--FNVEQVTYKN--LKFQVWDLGGQTS 369
+ +++G G GK+ +L + E + + TIG F + N +K Q+WD GQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 370 IRPYWRCYYGNTDAIIYVVD 429
R YY + V D
Sbjct: 72 YRAITSAYYRGAVGALIVYD 91
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 32.7 bits (71), Expect = 0.032
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 202 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 366
++++ILG G GKT+I+ + + TIG F ++V K + Q+WD GQ
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 367 SIRPYWRCYYGNTDAIIYVVD 429
+ +Y D + V D
Sbjct: 69 RFQSLGVAFYRGADCCVLVYD 89
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.042
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQTS 369
+++++G G GKTT + + GE I T+G V + + F VWD GQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 370 IRPYWRCYY--GNTDAIIYVVDS 432
+ YY G I++ V S
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTS 93
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 31.5 bits (68), Expect = 0.073
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Frame = +1
Query: 160 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 339
G+F + R + + + ++G +GKT++ +L E TT+P+I N E V K+
Sbjct: 25 GIF-FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV----WKY 78
Query: 340 QVW--DLGGQTSIRPYWRCYYG---NTDAIIYVVDSADRDR 447
W DL G + + + N A+++V++SA DR
Sbjct: 79 GAWLVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDR 119
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.13
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +1
Query: 202 MRILILGLDGAGKTTILYKLQVG---EVVTTIPTIGFNVEQVTYKN--LKFQVWDLGGQT 366
+++ ++G GKT+++ G E T + F + ++ +N + F +WDLGGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 367 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 465
+ AI+++ D + + + K+
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.13
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVEQ---VTYKNLKFQVWDLGGQTSI 372
+I+ILG AGKT++L G PTI N V +++ +WD GQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 373 RPYWRCYYGNTDAII--YVVDSAD 438
Y +T I+ + VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.13
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Frame = +1
Query: 202 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 366
++++ILG G GKT ++ + + TIG F + V K + Q+WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 367 SIRPYWRCYYGNTD--AIIY-VVDSADRDRIGISKDELVHMLREEE 495
+ +Y D I+Y V +S D + + E ++ ++E
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.22
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +1
Query: 205 RILILGLDGAGKTT---ILYKLQVGEVVTTI-PTIGFNVEQVTYK-NLKFQVWDLGGQTS 369
++L++G G+GK++ I++ V + + TI V + NL +WD GGQ +
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 370 IRPYWRC-----YYGNTDAIIYVVDSADRD 444
+ + N +IYV D R+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.22
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 205 RILILGLDGAGKTTILYKLQVGEVV 279
R+ ILG +GAGK+T++ K+ +GEV+
Sbjct: 721 RVAILGPNGAGKSTLI-KVLIGEVI 744
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 28.7 bits (61), Expect = 0.51
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +1
Query: 328 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE 489
++K ++WD GQ + YY N + I V D + +K + + R+
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.51
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 196 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 297
+E+R++I G G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 190 GAREMRILILGLDGAGKTTILYKLQV 267
G ++++L+LG +GKTTI+ ++++
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 462 FRYSYSIPVS*VYNIYYCICVAIVTSPIRPN 370
F ++Y++ S VYN + +C + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 133 NLLLLIRNVYALRLHIKDF*NCFFVLIYTWSTLNILFNNKYCTF 2
N + +R+ + R HI C ++ WS + L NN Y F
Sbjct: 422 NKCIQLRDYFDYRKHI-----CIVTDLFGWSVFDFLKNNNYIPF 460
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 453 SYSIPVS*VYNIYYCICVAIVTSPIRPNTGLSPKIPHLEL 334
S S +S + N+ Y C S + PN G + HL+L
Sbjct: 697 SISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDL 736
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 214 ILGLDGAGKTTILYKLQVGEVVTTIPTIGF 303
I+ LDG G T +L K V PT F
Sbjct: 275 IMALDGVGTTALLVKASVHRDGALFPTFPF 304
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 193 AREMRILILGLDGAGKTTI 249
++ I+++G+ GAGKTTI
Sbjct: 861 SKNASIILIGMRGAGKTTI 879
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 193 AREMRILILGLDGAGKTTILYKL 261
A E LILG+ G GKTT + L
Sbjct: 946 AAEHYSLILGMPGTGKTTTISSL 968
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 277 VTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVV 426
V IP IG N YKN+K ++ + I ++R Y N II V+
Sbjct: 256 VNRIPGIGHN-----YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVM 300
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 208 ILILGLDGAGKTTILYKL 261
I+++GL G+GKTT KL
Sbjct: 104 IMMVGLQGSGKTTTCSKL 121
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 338 NLRFLYVTCSTLNPIVGIVVTTSPTCNL*RIVVF 237
N R++ +C + I GI+++ SP+ L +VF
Sbjct: 113 NRRYILFSCVIIGSISGIILSWSPSSFLLGKIVF 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,733
Number of Sequences: 5004
Number of extensions: 47521
Number of successful extensions: 145
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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