Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32072
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 29 0.11
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 0.45
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 0.78
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 1.8
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 2.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 3.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 24 4.2
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 24 4.2
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 24 5.5
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 7.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 7.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 7.3
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 23 7.3
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 23 9.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 9.6
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 29.5 bits (63), Expect = 0.11
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGG 298
+I + Y + PV+ +G +L+D +G++Y+D G
Sbjct: 46 NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSG 80
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 0.45
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 47 EMANRGT--KLCFDIVRTYSTAKMPPTDF 127
E+ANR KLC+ I++ A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 0.78
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 143 TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 232
+G SY+ V+ + VY+ PS + A KKP ++
Sbjct: 977 SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 210 PIRSRCFSPRGTCSGYTTTT 269
P R+ C+SP G Y T T
Sbjct: 36 PARNACYSPNGKLFAYATAT 55
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 122 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 223
D P P PS Q + MPP +T Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 3.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 167 LLVGTKVPCTVWARNPSAAFWPC 99
+ VGT +WA P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 3 SSVTYCNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRR 122
+ +Y +RRN+ EE+ + R A KCR+R
Sbjct: 453 NGTSYSKGSSRRNSKNETDEEKRKSFLERNRQAALKCRQR 492
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 273 LPSLSYNHCMCPWVRSTGF 217
LPS S N+C W R GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 23.8 bits (49), Expect = 5.5
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 300 IPPNRSRYLLP-SLSYNHCMCPWVRSTGFL*AFVIEGGM*TPFICSTCWYEGPVYGLGTK 124
IP S YL+ ++S W G+ ++ G+ + S W GP+ G+ +
Sbjct: 28 IPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWT-SIIWIAGPLTGILIQ 86
Query: 123 SVGGILA 103
+ GIL+
Sbjct: 87 PIAGILS 93
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 192 RLQSRTPIRSRCFSP 236
R RTPIRS FSP
Sbjct: 518 REHGRTPIRSNTFSP 532
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 201 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 115
I G F + W+E P GLGT +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 294 PNRSRYLLPSLSYNHCMCPWVRS 226
PN RY +PS SY++ + P+ S
Sbjct: 2109 PNSIRYTIPSGSYSNDIKPYFYS 2131
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 201 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 115
I G F + W+E P GLGT +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 191 ACKLLSFVLLVGTKVPCTVWARNPSAAFWP 102
A +L +VGT V CTV+A A +P
Sbjct: 114 AASVLIDYCIVGTMVFCTVYALGELAVAFP 143
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 36 RNTSKWLIEEQNYASTSSE 92
R+ ++WLI +NYA + +E
Sbjct: 2720 RDLTRWLISFKNYAESYAE 2738
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,995
Number of Sequences: 5004
Number of extensions: 26647
Number of successful extensions: 86
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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