Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32072
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.61 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.6  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   7.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 39  NTSKWLIEEQNYASTSSERTARP 107
           +T +WL+ E+    TSS  +  P
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEP 94



 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 162 CWYEGPVYGLGTKSVGGIL 106
           CW    + G G+ S GG++
Sbjct: 13  CWCCDNLGGPGSSSAGGVV 31


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 297  PPNRSRYLLPSLSYNHC 247
            PPNR    +P  +YN C
Sbjct: 1648 PPNRKLPPVPGSNYNTC 1664


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 217 EAGASHPGAHAVVIRQRRQEIPGSVRWN 300
           +  AS PG   +V      E+PGS  W+
Sbjct: 403 DVAASGPGLAFLVYPSAVLELPGSSIWS 430


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 235 GEKHRLLIG 209
           G+KH+LLIG
Sbjct: 184 GQKHKLLIG 192


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 252 HCMCPWVR 229
           H M PWVR
Sbjct: 335 HVMAPWVR 342


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 240 GTCSGYTTTTARDTWI 287
           G C+G  TTTA + ++
Sbjct: 403 GGCNGLHTTTAHNRFL 418


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 173 FVLLVGTKVPCTVWARNPSAAFWP 102
           F L VGT  P  + A    + F+P
Sbjct: 38  FWLFVGTYFPSLIGANEHYSKFFP 61


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 217 EAGASHPGAHAVVIRQRRQEIPGSVRWN 300
           +   S PG   +V      E+PGS  W+
Sbjct: 350 DVAVSGPGLAFLVYPSAVLELPGSSIWS 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,867
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)