Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32071
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     34   0.067
05_05_0321 + 24091997-24092530                                         32   0.27 
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    28   4.4  
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831     28   4.4  
11_01_0762 + 6400052-6401845,6401977-6402609                           28   4.4  

>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 132 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKIDAETKVKIEEMNKMV 311
           K+ RL+QAKEEA+ E+               A+  G       +++ ET  KI ++ +  
Sbjct: 31  KSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDSGANVKRLEQETAEKIAQLKQQA 90

Query: 312 QTQKEAVIKDVLNLVYDIK 368
            +    VI+ +L  V  +K
Sbjct: 91  ASISPEVIQMLLRHVTTVK 109


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +1

Query: 88  EKRAAEXSQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRS 267
           ++ AAE + R +  ++  A +R  RRL+ +   +  S  GS   +  + +VPG + R  +
Sbjct: 90  QEEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLNFYVPGLLTRSMT 148

Query: 268 MPRP 279
            PRP
Sbjct: 149 TPRP 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 192 VCTFQLHLEPPPWPALG 142
           V  FQ  + PPPWPA G
Sbjct: 231 VAAFQSRMMPPPWPARG 247


>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
          Length = 418

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 54  QTQGNPTASSC*KTRCGXKSARQGKRKAKRLK 149
           +T  +PT SSC   +CG    +  K K K  K
Sbjct: 10  ETMASPTTSSCGTCKCGANDDKAKKMKTKTKK 41


>11_01_0762 + 6400052-6401845,6401977-6402609
          Length = 808

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 43  IWRVRPKXIQQLLAAEKRAAEXSQRGKXSEKRNA*SRPRRRLKMK 177
           +W    +   QLL +E+R  E ++R    EK+    + RRR + K
Sbjct: 277 LWNNNQRDDDQLLPSERRDREWARRKAEMEKKRRERKQRRRERKK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,049
Number of Sequences: 37544
Number of extensions: 203961
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)