Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32071
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    76   2e-14
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    27   7.0  
U58758-6|AAO38577.1|  604|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U58758-5|AAL11107.1|  693|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   9.2  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   9.2  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   9.2  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   9.2  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 48/117 (41%), Positives = 63/117 (53%)
 Frame = +3

Query: 45  MASQTQGNPTASSC*KTRCGXKSARQGKRKAKRLKQAKEEAQDEVXXXXXXXXXXXXXXX 224
           MASQTQG     +  K R   K     KRK +R KQAK+EAQ EV               
Sbjct: 1   MASQTQGIQQLLAAEK-RAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFE 59

Query: 225 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 395
            +++GT+E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 60  QQYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 166 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 276
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
            protein C52B9.8 protein.
          Length = 1336

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 117  RQGKRKAKRLKQAKEEAQDE 176
            R+ +++AKRLK+ KEE +D+
Sbjct: 1278 RRARKEAKRLKRQKEEQEDD 1297


>U58758-6|AAO38577.1|  604|Caenorhabditis elegans Hypothetical
           protein ZK1127.9e protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 36  VFDMASQTQGNPTASSC*KTRCGXKSARQGKRKAKRLKQAKEEAQ 170
           VFD    + G     +C    C  K   +   + KR+K+AKEE Q
Sbjct: 280 VFDKRYLSLGATERRACFDAFCREKIESEKAERRKRVKEAKEEFQ 324


>U58758-5|AAL11107.1|  693|Caenorhabditis elegans Hypothetical
           protein ZK1127.9c protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 36  VFDMASQTQGNPTASSC*KTRCGXKSARQGKRKAKRLKQAKEEAQ 170
           VFD    + G     +C    C  K   +   + KR+K+AKEE Q
Sbjct: 280 VFDKRYLSLGATERRACFDAFCREKIESEKAERRKRVKEAKEEFQ 324


>U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical
           protein ZK1127.9a protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 36  VFDMASQTQGNPTASSC*KTRCGXKSARQGKRKAKRLKQAKEEAQ 170
           VFD    + G     +C    C  K   +   + KR+K+AKEE Q
Sbjct: 501 VFDKRYLSLGATERRACFDAFCREKIESEKAERRKRVKEAKEEFQ 545


>U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical
           protein ZK1127.9b protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 36  VFDMASQTQGNPTASSC*KTRCGXKSARQGKRKAKRLKQAKEEAQ 170
           VFD    + G     +C    C  K   +   + KR+K+AKEE Q
Sbjct: 492 VFDKRYLSLGATERRACFDAFCREKIESEKAERRKRVKEAKEEFQ 536


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 439 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 317
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 439 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 317
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 439 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 317
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 439 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 317
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 97  IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,187
Number of Sequences: 27780
Number of extensions: 179216
Number of successful extensions: 494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)