Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32070
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   4.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   7.7  

>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 436 TASPNTGPLVVYNKCTPSFT 377
           +A PN GP  +Y +C  +FT
Sbjct: 233 SAFPNYGPFYIYGQCVATFT 252


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 7   NHFIEKFLLLLNSIKNERLKHAFSQVS 87
           NH IE+F+LL N    E +   FS  S
Sbjct: 647 NHLIEEFMLLANRSVAEHISKNFSNNS 673


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 286 VIRPFGSGVEDDVLGTS---RRSGRPRTVSV 203
           V+ PF SG+++   GT+   R+SGR  T S+
Sbjct: 40  VLHPFTSGLDEKASGTASKDRKSGRAGTKSL 70


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 381 KLGVHLL*TTNGPVFGEAVEEV 446
           KL  + + +TN PVFG AV+ V
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNV 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,292
Number of Sequences: 5004
Number of extensions: 34228
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)