Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32070
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   6.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   6.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   6.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 411 WLFTTNVRLVLRKLFLHLTLI*NFLPRLKVTTFCKV 304
           WL+     L + KL L L+   NFL     T  CK+
Sbjct: 144 WLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKL 179


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -2

Query: 444 LLQQPHRTRVRWL 406
           ++++P +TR+RW+
Sbjct: 347 MMRRPKKTRLRWM 359


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 VRGRPDRRLVPRTSSSTPEPKGR 281
           +R   +++L  R+ S +PE +GR
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGR 87


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -3

Query: 227 RPTSNCLCNVCLQI 186
           RP+   +CN+C ++
Sbjct: 28  RPSKEPICNICKRV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,769
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)