Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32069
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   4.9  
02_05_1291 - 35516715-35517251,35517339-35518185,35518480-355190...    28   8.6  

>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
            31227790-31228014,31228097-31228255,31228393-31228551,
            31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
 Frame = -3

Query: 710  VTEQMEKISMLGAEKSKLREAVNALVEMK-----VQNELQAKKANSS 585
            VTE+ EK++++  E SKL + ++   EM+     ++ +LQAK +  S
Sbjct: 1759 VTEEREKLALVNTEVSKLTQKLSKSAEMEKKIEHLEQKLQAKDSVES 1805


>02_05_1291 -
           35516715-35517251,35517339-35518185,35518480-35519009,
           35519092-35519529
          Length = 783

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 109 LIHVL*FCKALYHFKLCVLQVQDSLLSFKF 20
           +++++  CK L + +L + Q +DS+L  KF
Sbjct: 488 ILNIIATCKRLEYLRLSMCQTEDSVLQMKF 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,625
Number of Sequences: 37544
Number of extensions: 201018
Number of successful extensions: 307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)