Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32061
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0777 + 27636342-27637115                                         29   2.6  
01_06_1740 - 39575614-39576981                                         29   3.4  
06_03_0995 + 26704029-26704107,26704543-26704595,26704907-267051...    28   7.9  

>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 144 MLIALRGYFSVALAWRCALRAQSGRVTNTGPNKSRASQNLPPETRPTE 1
           ++  LRG  + ALAWR A  +     T       RA Q  PP   P E
Sbjct: 172 LVARLRGVQAQALAWRDAALSNRAEATALRAELERALQPPPPPPPPAE 219


>01_06_1740 - 39575614-39576981
          Length = 455

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 240 ILRPRNFRKKRVQSFCFT 187
           +LRPRN +K+R  +FCFT
Sbjct: 253 MLRPRNDKKRRPVAFCFT 270


>06_03_0995 +
           26704029-26704107,26704543-26704595,26704907-26705122,
           26705328-26705411,26705498-26705572,26705711-26705794,
           26706179-26706268,26707463-26707558,26707655-26707726,
           26708500-26708604,26708804-26708845
          Length = 331

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 361 CI*HTHACDSLCLCIGYIT 417
           C+ + HA D  CLC+G IT
Sbjct: 28  CVSNHHAIDITCLCVGKIT 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,507
Number of Sequences: 37544
Number of extensions: 271577
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)