Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32061
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.        28   5.4  

>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 376 VCVKYMVVCVMFFFNRFNVFIMHNLKNN*HSALLLYILYKCGKFHNP 236
           + VK + + +MF F   ++FI H L+   H  L L  +    K+H P
Sbjct: 89  ILVKKIGILIMFIFFMTSIFIFHILQQTIHLLLFLLAIINSLKYHLP 135


>Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical
           protein F13G3.8 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 542 NLKLYLLQLFINILV*FTNIFLYLYIGINYQYIIT*FTNIICVI*PIHRHKL 387
           NL+ Y +Q  + + +    IFL+LYI     + +T F +I         HKL
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKL 309


>U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 542 NLKLYLLQLFINILV*FTNIFLYLYIGINYQYIIT*FTNIICVI*PIHRHKL 387
           NL+ Y +Q  + + +    IFL+LYI     + +T F +I         HKL
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKL 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,846
Number of Sequences: 27780
Number of extensions: 265295
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)