Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32060
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   0.99 
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   4.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   5.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   7.0  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   9.2  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   9.2  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 334 HDDLGLESIRKYMK-SASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTD 510
           H+   +E  +K++   AS+R+ + +M   NR+I +    +P  +   +    R  H+L D
Sbjct: 318 HEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVD 377

Query: 511 PSDP 522
              P
Sbjct: 378 ELRP 381


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 358 IRKYMKSASERYFDKAMRHDNRLI 429
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 536 NAKVIGSDGSVSTCLGRRR 480
           N++ +GS GS +T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 133 PMICKRSKMSLRNKVTLYK 189
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 322 NVDLHDDLGLESIRKYMKSASERYFDKAMRHDN--RLIVAAADYS 450
           N++LH D    ++  +++ A + Y+   + H N  R ++   D S
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPS 332


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 346 GLESIRKYMKSASERYFDKAMRHDNRLIVAA 438
           G  S+RK +  A   YF + +  D  ++V A
Sbjct: 71  GRPSLRKALSEAYSPYFKRTLNPDTEIVVTA 101


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 542 PSALILGAGLGTPVTVLVE 598
           PS+ I+GAGLG  V +L +
Sbjct: 489 PSSAIMGAGLGKDVALLTD 507


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 43  LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKR 150
           LG++   +M +  H  ++ D+   +LGR+ P++C R
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 280 RFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMR 411
           R+CR  + A W+   + L+  L L   R   +  +E   D   R
Sbjct: 326 RYCRTEISAAWYYMKLGLNCCLRLGLHRNITEGFTEEQIDSRRR 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,218
Number of Sequences: 5004
Number of extensions: 47480
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)