Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32060
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 41 9e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 40 0.002
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 39 0.003
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 34 0.075
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 31 0.70
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 3.7
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical pr... 28 6.5
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 8.6
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 8.6
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 8.6
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 8.6
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 8.6
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 13 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 192
PI + LG + + F H + + A F L ++ K S + + + LYKT
Sbjct: 170 PIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---KYSTSNKKLMILLYKT 226
Query: 193 CIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 291
IRP + Y +VV + ++ T++S+Q+ F R
Sbjct: 227 FIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 13 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 192
PI + + LG+ D+ +TF+PHIK + + L R ++ + L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 193 CIRPVMTYASVVFAHAARTHIDTL 264
I P++ Y S V++ + + TL
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/93 (26%), Positives = 43/93 (46%)
Frame = +1
Query: 13 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 192
PI + LG + + F H K + A F L ++ +K + + LYKT
Sbjct: 140 PIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKT 196
Query: 193 CIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 291
IRP + Y +VV + ++ ++S+Q+ F R
Sbjct: 197 FIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 34.3 bits (75), Expect = 0.075
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +1
Query: 13 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 192
PI + V+ LG+ D + F HI V + + R ++ S S + LYKT
Sbjct: 969 PITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKT 1025
Query: 193 CIRPVMTYASVVFA 234
+ P+M Y S V+A
Sbjct: 1026 YVAPIMNYCSEVYA 1039
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 451 PNPDHAGASHRRRPRHVLTDPSD 519
PN DH G +H RR R+ DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 451 PNPDHAGASHRRRPRHVLTDPSD 519
PN DH G +HRR+ H DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 451 PNPDHAGASHRRRPRHVLTDPSD 519
PN DH G +HRRR R DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 103 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 282
RA + M+C+R SL++++ K C R M Y + + + +T D + S SR
Sbjct: 37 RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94
Query: 283 FCRL-AVGAPWFVRN 324
L +VG+P + N
Sbjct: 95 SSNLSSVGSPQSLAN 109
>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 343 LGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDP 522
+G E ++ + +ERYFDK D+ L A AD H + +H+ + D
Sbjct: 484 VGPEDAFWFLIAVTERYFDKTY-FDSNLTGAQADQEVLKGLLEVQHPKIMKHLKSLDIDV 542
Query: 523 ITFALDAFSS 552
+F L+ F S
Sbjct: 543 ASFTLNWFIS 552
>Z69885-2|CAC35825.1| 469|Caenorhabditis elegans Hypothetical
protein T04C10.2b protein.
Length = 469
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 319 RNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN-RLIVAAADYSPN-PDHAGASHRRRP 492
++V+ + D GL K + S D+ ++++ R I+ + N P GA RR
Sbjct: 110 QHVEDNRDQGLNIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRSN 169
Query: 493 RHVLTDPS-DP 522
RH +TD S DP
Sbjct: 170 RHHVTDASLDP 180
>Z69885-1|CAC35824.1| 467|Caenorhabditis elegans Hypothetical
protein T04C10.2a protein.
Length = 467
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 319 RNVDLHDDLGLESIRKYMKSASERYFDKAMRHDN-RLIVAAADYSPN-PDHAGASHRRRP 492
++V+ + D GL K + S D+ ++++ R I+ + N P GA RR
Sbjct: 110 QHVEDNRDQGLNIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRSN 169
Query: 493 RHVLTDPS-DP 522
RH +TD S DP
Sbjct: 170 RHHVTDASLDP 180
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 385 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 516
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 385 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 516
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 443 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 486
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 385 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 516
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 377 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 420
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 385 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 516
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 521 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 564
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 385 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 516
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,339
Number of Sequences: 27780
Number of extensions: 276502
Number of successful extensions: 686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -