Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32059
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   121   6e-29
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   121   6e-29
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   7.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   9.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  121 bits (291), Expect = 6e-29
 Identities = 57/79 (72%), Positives = 65/79 (82%)
 Frame = +3

Query: 30  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 209
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF   DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 210 IVVNLTGRLNKCGVI*PXF 266
           IV+ L GR+NKCGVI P F
Sbjct: 61  IVIQLNGRINKCGVISPRF 79



 Score = 48.4 bits (110), Expect = 5e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERWTN-LLPXRQFGYLGLTTSGGMMDHEEXXRK 384
           RF+V + DIE+W N LLP RQ G + LTTS G+M H E   K
Sbjct: 78  RFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAK 119


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  121 bits (291), Expect = 6e-29
 Identities = 57/79 (72%), Positives = 65/79 (82%)
 Frame = +3

Query: 30  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 209
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF   DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 210 IVVNLTGRLNKCGVI*PXF 266
           IV+ L GR+NKCGVI P F
Sbjct: 61  IVIQLNGRINKCGVISPRF 79



 Score = 48.4 bits (110), Expect = 5e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERWTN-LLPXRQFGYLGLTTSGGMMDHEEXXRK 384
           RF+V + DIE+W N LLP RQ G + LTTS G+M H E   K
Sbjct: 78  RFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAK 119


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = -1

Query: 280 SWEHQNXGQITPHLFSLPVRFTTILPAL*SSXISNSPM*PCFIITVKNLTMTLEQGLMRT 101
           SW   +    +PHL     +F  I          ++P  PC I  V+    + +  L+R 
Sbjct: 327 SWMIASCNIFSPHLIHAGTKFLKI---------DSTPSTPCLISVVRTGFRSNKGQLIRN 377

Query: 100 CLFP--RFSALCIDFKASLNTFIRTMAKI*LAFVA 2
            L+P  R S L +D  + L T +  ++ + + F+A
Sbjct: 378 LLYPNLRPSQLYLDSMSFLKT-MAILSFVSIVFIA 411


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 163 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 23
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 283 DIERWTNLLPXRQFGYLGLT 342
           + +RW  L   R+FG +GL+
Sbjct: 272 EFQRWLRLYEFRRFGLIGLS 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,936
Number of Sequences: 5004
Number of extensions: 24557
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)