Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32059
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          133   8e-32
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   132   1e-31
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           77   9e-15
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    34   0.049
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124...    31   0.35 
04_04_1420 + 33441260-33443704                                         27   7.4  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  133 bits (321), Expect = 8e-32
 Identities = 62/79 (78%), Positives = 70/79 (88%)
 Frame = +3

Query: 30  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 209
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE  DDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 210 IVVNLTGRLNKCGVI*PXF 266
           IVV L GRLNKCGVI P F
Sbjct: 61  IVVELNGRLNKCGVISPRF 79



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERWT-NLLPXRQFGYLGLTTSGGMMDHEEXXRKHL 390
           RFDV + +IE WT  LLP RQFGY+ LTTS G+MDHEE  RK++
Sbjct: 78  RFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  132 bits (319), Expect = 1e-31
 Identities = 61/79 (77%), Positives = 70/79 (88%)
 Frame = +3

Query: 30  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 209
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE  DDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 210 IVVNLTGRLNKCGVI*PXF 266
           IVV L GRLNKCGVI P F
Sbjct: 61  IVVELNGRLNKCGVISPRF 79



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERWT-NLLPXRQFGYLGLTTSGGMMDHEEXXRKHL 390
           RFDV + +IE WT  LLP RQFGY+ LTTS G+MDHEE  RK++
Sbjct: 78  RFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNV 121


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = +3

Query: 45  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIVVNL 224
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE+ D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 225 TGRLNKC 245
            GR+  C
Sbjct: 65  HGRIKDC 71



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERW-TNLLPXRQFGYLGLTTSGGMMDHEEXXRKHL 390
           R D+   +IE++   +LP RQ+GY+ +TT  G++DHEE  ++++
Sbjct: 77  RQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNV 120


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3

Query: 189 DDHRAGKIVVNLTGRLNKCGVI 254
           DDH++G+I++   GRLNK GVI
Sbjct: 913 DDHKSGEIILEFDGRLNKWGVI 934


>01_01_0136 +
           1237623-1237820,1238313-1239001,1239978-1240308,
           1240614-1241351
          Length = 651

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 255 KSHHTCLVCLSDLQQSCQLCDHXRFQTLRC 166
           + H TC  C++++ Q CQ C      T RC
Sbjct: 70  RGHITCSTCVAEMGQECQWCRAPEATTTRC 99


>04_04_1420 + 33441260-33443704
          Length = 814

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 312 LTTVWLPRPYNKWWDD 359
           +++ + P P+NKWWD+
Sbjct: 202 ISSNYWPSPFNKWWDN 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,963
Number of Sequences: 37544
Number of extensions: 158328
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)