Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32059
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   138   1e-33
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    30   0.94 
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    27   6.6  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    27   6.6  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  138 bits (335), Expect = 1e-33
 Identities = 67/77 (87%), Positives = 71/77 (92%)
 Frame = +3

Query: 30  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGK 209
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEI DDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 210 IVVNLTGRLNKCGVI*P 260
           IVVNLTGRLNK  VI P
Sbjct: 61  IVVNLTGRLNKASVISP 77



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
 Frame = +1

Query: 262 RFDVPMNDIERWTN-LLPXRQFGYLGLTTSGGMMDHEEXXRKHL 390
           R ++ +ND+E++TN LLP RQFGYL LTTS G+MDHEE  RKHL
Sbjct: 78  RLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHL 121


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 315 TTVWL-PRPYNKWW 353
           T +WL PRPYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 42   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIXDDHRAGKIV 215
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI   H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 216  VN 221
            +N
Sbjct: 886  LN 887


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 302 LVHLSISFMGTSKRRSNHTTLV*SACQIYNNLASSVIIXD 183
           + HLS    GT K +S+  TL  S  +  NN++++V   D
Sbjct: 58  VTHLSKKQKGTDKEKSDFVTLTMSRIKTCNNVSTAVADAD 97


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 6   TNAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 167
           T A  I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 492 TEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 6   TNAS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGY 167
           T A  I  M +  + +DA  + H  + + +  + +RP  K+I  FL + +  GY
Sbjct: 492 TEADLISLMDKYGIGTDATHAEHIEKIKTREYIGVRPDGKLIPSFLGLALVDGY 545


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 182 FKLSDVTVLHHHC*KLNDDFGTGPDEDL 99
           F+  +V V +     ++DDFG+ PD+DL
Sbjct: 35  FRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,953,247
Number of Sequences: 27780
Number of extensions: 139054
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)