Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32059
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 246 HTCLVCLSDLQQSCQLCDHXRFQT 175
           H C VC     QS QL  H R  T
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHT 199


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 234 VCLSDLQQSCQLCDHXRFQTLRCNRASSSLL 142
           +C   +Q SC  C     +   C++ S+  L
Sbjct: 78  ICAEGMQCSCNKCIGCSAEKFECSKTSNPCL 108


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 206 ASSVIIXDFKLSDVTVLHHH 147
           A+  ++  F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 216  QQSCQLCDHXRFQTLRCNRASSSLLKT 136
            QQS Q     + QT+  N+A  S+L+T
Sbjct: 976  QQSQQSQQQQQQQTIVTNQAGKSILQT 1002


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 96  FSLAFQHYV*ILRRHSIRSYAPWLRF 19
           F LAF   + +  ++ I     WLRF
Sbjct: 56  FGLAFVQLINVNEKNQIMKSNVWLRF 81


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 284 ILKDGLICCPXDSL 325
           +L DGL+C   DS+
Sbjct: 70  LLSDGLMCVEKDSI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,728
Number of Sequences: 438
Number of extensions: 1541
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)