Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32058
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 29 3.1
04_01_0066 - 652339-652382,652641-653593,654492-654568,655812-65... 29 4.1
11_01_0464 + 3597568-3600244,3600345-3600742 28 7.1
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 28 7.1
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 28 7.1
01_06_1052 + 34129126-34130490 28 7.1
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 9.4
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 29.5 bits (63), Expect = 3.1
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 317 LVWLIPDVYREFKDQAQNHIRLLHAIVS 400
L++++P +Y +++DQ I + H+++S
Sbjct: 145 LIYIVPPLYEKYQDQVDEKIGMAHSVLS 172
>04_01_0066 -
652339-652382,652641-653593,654492-654568,655812-655917,
656200-656261,656676-656784,657015-657385
Length = 573
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 440 TLQGNLMMFKSDDITTMLSTSLGWE--TFEQYCLWQLLTAHDISVEDVLPIIPKLSFKEH 613
T + F I ML +L + + + + +L A+D +++DVLP I +LS E
Sbjct: 301 TKKDYFQQFAKSPIKKMLEIALSFSESNWSEEHIRPMLLAYD-TLQDVLPTIRELSPDEP 359
Query: 614 SEALTSVL 637
E TS+L
Sbjct: 360 DEFFTSIL 367
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +2
Query: 404 LDACQLQRLICLTLQGN------LMMFKSDDITTMLSTSLGWETFEQYCLWQ 541
L AC + +++C +L GN L+ FK+ I + W Q C W+
Sbjct: 13 LMACSVIQIVCQSLHGNETDRLSLLDFKNAIILDPQQALVSWNDSNQVCSWE 64
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 564 DMSCAVKSCHRQYCSNVSHPRLVDNIVVISSDLNII 457
D+SC SC C V HP D ++ D N++
Sbjct: 28 DISCGAASCST--CGAVEHPLSADAAAILVVDTNVV 61
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 56 EHKRKLVLETFKEIHSQGSLRCVGFSLL 139
EH K V+ET K+ +SQ ++C+ LL
Sbjct: 431 EHDLKGVMETMKQPYSQSEVKCLMLQLL 458
>01_06_1052 + 34129126-34130490
Length = 454
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 376 KIIACNRIDPRCVSTSKTNLFDITRKFNDVQIGRYHDNVVD 498
+II +R+ P S S+ L I RKF DV+ G Y NV +
Sbjct: 277 RIIEDSRVAPTKFSKSRDPL--IVRKFGDVEPGNYWYNVCE 315
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 NSPLFSMFNYLIDSSSGA-EHKRKLVLETFKEIHSQGSLRCVGFSLLFY-LRVCYERDRR 175
+S + S+ +++ S+ EH K+I + C GF ++FY L ER+++
Sbjct: 697 DSSIHSVLLHILSMSTQLLEHSHGSYCHDLKDIEDIQLVLCCGFDIVFYMLSNLPEREKK 756
Query: 176 SER 184
S+R
Sbjct: 757 SKR 759
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,090
Number of Sequences: 37544
Number of extensions: 360102
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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