Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32058
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical ...    60   2e-09
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    42   5e-04
AL023828-16|CAA19461.1|  364|Caenorhabditis elegans Hypothetical...    33   0.17 
AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    29   3.6  
AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical
           protein Y92H12A.3 protein.
          Length = 249

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
 Frame = +2

Query: 488 MLSTSLGWETFEQYCLWQLLTAHDISVEDVLPIIPKLSFKEHSEALTSVLLMLKQ--ERP 661
           M+  S+ W T  Q+  W L+ A  + +E  L  IPK     H EA+ ++LLM+K+    P
Sbjct: 1   MVMDSVDWATTPQWVFWHLVHADGVPIEWFLSTIPKFDAVGHDEAIANILLMMKRMDREP 60

Query: 662 TADVVRQLFCRTYDEEDTSVVSTLMYWCQDYE 757
            A ++R LF R  +++DT  +  +    +D E
Sbjct: 61  WAGLIRALFNRVPNKDDTFTIDAMKVLIEDSE 92


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +2

Query: 221 DVYKDYCSYLELKLAESLADDFERCQEYDTNVLVWLIPDVYREFKDQAQNHIRLLHAIVS 400
           + YK+        + E LA D + C   D  +  +L+P V+ +F+++  +   LL  + +
Sbjct: 707 ECYKNIAKMSGRSVDEMLASDLQLCAVNDNRLFAYLVPFVFSQFEEEVMSTPALLATLCA 766

Query: 401 TLDACQLQRLI 433
            LDA QL+  +
Sbjct: 767 NLDAIQLRSFV 777


>AL023828-16|CAA19461.1|  364|Caenorhabditis elegans Hypothetical
           protein Y17G7B.14 protein.
          Length = 364

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 579 KTSSTDMSCAVKSCHRQYCSN--VSHPRLVDNIVVISSDLNIIK 454
           KT+ T MS   KSCH ++CSN  ++ P ++ N +V S    II+
Sbjct: 250 KTAQTTMSKVEKSCHVEFCSNSQINVPLVLPNQLVPSFRTGIIE 293


>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 149 RVCYERDRRSERDSAKRRNVKFKADVYKDY 238
           R+ +ERD   ++DS K  N  F A++ ++Y
Sbjct: 161 RLNFERDAEQKKDSTKTNNSSFVAEMTREY 190


>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = +2

Query: 188 SAKRRNVKFKADVYKDYCSYLELKLAESLADDFERCQEYD----TNVLVWL---IPDVYR 346
           S + +N  F A +Y+ + +++ L L  S+   +E  +EY+      +  W+    P V +
Sbjct: 208 SEQWQNFLFAAHIYRRFGAHMNLYLISSVTSFYELMKEYEKEGYVTIQPWVKVHFPGVPK 267

Query: 347 EFKDQAQNHIRLLHAIVSTLDACQLQ 424
           E  D   N I   +   S  D C LQ
Sbjct: 268 EIAD-PYNQIEFRNQAASQTD-CLLQ 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,998
Number of Sequences: 27780
Number of extensions: 343294
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)