Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32058
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 684 NCLTTSAVGLSCFNINRTDVSASECS 607
           +C  T   G  C+N    + +A +CS
Sbjct: 756 DCEMTCPAGCKCYNDRTWNTNAVDCS 781


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 560 ISVEDVLPIIPKLSFKEHS 616
           +S++D+LP+ PKL  K  +
Sbjct: 4   LSLKDILPLNPKLYDKHRA 22


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 620 ALTSVLLMLKQERPTADVVRQLFCRTYDEED----TSVVSTLMYWC 745
           AL ++L   ++  PTA  + +L C    EE+      +  TL Y C
Sbjct: 87  ALGALLSKGEESFPTARSLEKLLCNVEAEENYNLLEDIYETLSYDC 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,967
Number of Sequences: 438
Number of extensions: 4094
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)