Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32054
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.2  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.1  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.6  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.3  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +2

Query: 518 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 697
           L +  + +K  + Q+ N       H+E  + K E+K E + P+ +++     + + +   
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE-IKKQEGGSSTEKVGQP 239

Query: 698 TSQSDKSQGA 727
           +S  DK++G+
Sbjct: 240 SSSDDKAKGS 249


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 551 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 661
           V+  PND     P    P P P++K++ R P   R T
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 440 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 333
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 563 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 712
           P      N   E+P  KP +   + +P P+  TN+   + D++T +   D
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQD 251


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 29  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEITE 136
           +++G  ++ IQI +  YH+A   SCE   V G  E  E
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYE 556


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 132 VISKAPCTFSQEQTQALWYDTF*I*ILTSKPPEA*RAITASC 7
           + +  PC   QE+ Q++W++   + +  +   E  R   A+C
Sbjct: 513 IAASEPCPICQEKFQSVWHEEAEVWVFMNAVEEEGRIFHATC 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,844
Number of Sequences: 5004
Number of extensions: 52653
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)