Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32053
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 29 0.31
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 0.71
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.6
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 27 2.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 2.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 6.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 6.7
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 8.8
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 29.5 bits (63), Expect = 0.31
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 82 EENYLNYKHFDRVTKTIQVFSELN*KCFFCSLHNVAIDYSDSK 210
E ++L H D +T + + + LN KC+F S+ D + +K
Sbjct: 362 ENSFLIGNHADELTPYLPILARLNQKCYFMSIPCCVHDLTGAK 404
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 0.71
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 178 ASYKKNTFNSIRKTLELFSLLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQR 17
AS N F + L++ S Y+++ +L + L I S ++IY+AC+L+ R
Sbjct: 442 ASVSLNHFVYCIERLQIVSPSYEDIISLWSSLMIIISSSLGSDEIYKACLLFLR 495
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 318 NSMEKDSLKAQMEYDEIDKLYDECLEYLKEAKIDV 422
N +EK + ++ DE+D+ Y E L KI+V
Sbjct: 726 NDLEKSLVLSERSKDELDESYKSLQEQLASKKIEV 760
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 261 LKVLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEIDK 374
L +N R N+ D+LN+ + KD K Q YD+I K
Sbjct: 181 LDKVNVRLNETRIYIDLLNDFLLKDCRKKQATYDKIIK 218
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 246 TPNPNLKVLNRRKNKEMEAKDILNNSMEKDSLKA 347
TP PN + ++N+++ + ++ N + DS+ A
Sbjct: 163 TPKPNTSAIEVKENRKVNLRCVVENRLLPDSVTA 196
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 279 RKNKEMEAKDILNNSMEKDSLKAQME-YDEIDKLYDECLEYLKE 407
+KN E E +S EKD L+ Q++ ++++ D+ ++ LKE
Sbjct: 129 KKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -1
Query: 169 KKNTFNSIRKTLELFSLLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQRVITY 5
K++ NSI++ + L S NVY L LFK YR VL Q V +Y
Sbjct: 3341 KQSLENSIKERILLMSWKDTNVYALKESAKKSHAELFKVLHRYRE-VLRQPVSSY 3394
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 172 YKKNTFNSIRKTLELF---SLLYQNVYNLSNFLHNPILSLFKFNKIYRA 35
Y+K+ N ++ +F ++ Y N S ++ +SLF IYRA
Sbjct: 145 YQKSIINQLKSFEAIFDWDNIFYTMDQNRSEAVNEAFISLFNAGLIYRA 193
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 255 PNLKVLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEID 371
PN+KVL +K K +LN E DS A+ +Y D
Sbjct: 203 PNIKVLPPKKKKNASWGKMLNEDPEYDS--AEEDYLSTD 239
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 300 AKDILNNSMEKDSLKAQMEYDEIDKLYD 383
A NN M K+ L+ Y ID YD
Sbjct: 284 ASHFSNNKMHKERLQEFSSYKNIDDYYD 311
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 255 PNLKVLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEIDKL 377
P+L L N+ E D+++ E S + + E DE+D +
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,834
Number of Sequences: 5004
Number of extensions: 25304
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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