Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32053
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    28   3.8  
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547...    28   5.1  
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003...    27   6.7  
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205     27   6.7  
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400...    27   8.8  
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    27   8.8  

>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +3

Query: 210 RTNK*RVVI*IKTPNPNLK--VLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEIDKLYD 383
           RT   +VV  I+    ++K  +LN ++ K+  AKD+   S+  +S K++ E  EI K++ 
Sbjct: 291 RTEALKVVAQIELDLRDIKDRILNEKRAKDEAAKDL--QSVRMESEKSKSELAEISKVHQ 348

Query: 384 ECLEYLKE 407
             L+  +E
Sbjct: 349 AKLKEEEE 356


>07_01_0716 +
           5472618-5472818,5472943-5472985,5473672-5473761,
           5473863-5473938,5474435-5474504,5474911-5475075,
           5475261-5475404,5475547-5475651,5475876-5476022,
           5476463-5476531,5476882-5476989,5477392-5477483,
           5477559-5477598,5478129-5478221,5478386-5478958,
           5479596-5479610
          Length = 676

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 178 ASYKKNTFNSIRKTLELFSLLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQRVITY 5
           AS  +   N+I++T +   LL    Y+L     NP +  F +  I+R+ +   R + Y
Sbjct: 414 ASLTRKRVNAIKETCKSSGLLKIRGYDLDRPKRNPAMVTFLYTIIHRSPICPPRHLQY 471


>12_02_0362 +
           17998110-17998345,17998877-17998958,18000309-18000392,
           18000600-18000734,18001395-18001570,18001654-18001805,
           18003730-18004575,18004961-18005301
          Length = 683

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 LKVLNRRKNKEMEAKDILNNSMEKDSLKAQME 356
           ++ +NR  N       ++ N ++KD +KAQME
Sbjct: 422 IRDVNRNGNDGTNVTSLMVNKIDKDKVKAQME 453


>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
          Length = 220

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 163 NTFNSIRKTLELFSL-LYQNVYNLSNFLHNPILSLFKFNKIYRA 35
           N+   ++K LE++   L QN Y   NFL    LS F F   + A
Sbjct: 138 NSLEKLKKVLEVYEARLSQNTYLAGNFLSFVDLSHFPFTFYFMA 181


>12_02_1042 + 25638585-25638711,25639585-25639745,25639873-25640064,
            25640221-25640315,25640645-25640807,25640905-25641015,
            25641611-25642741,25642813-25642965,25643060-25643159,
            25643333-25643427,25643508-25643681,25643751-25643807,
            25643887-25643958,25644151-25644249,25644320-25644451,
            25644549-25644722,25644830-25644957,25645065-25645119
          Length = 1072

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 342  KAQMEYDEIDKLYDECLEYL 401
            + +ME D I+K +DEC+ +L
Sbjct: 991  RCEMEVDRIEKQFDECVVFL 1010


>02_04_0038 - 19110520-19110574,19110684-19110811,19110912-19111085,
            19111189-19111320,19111391-19111489,19111680-19111751,
            19111831-19111887,19111957-19112130,19112211-19112305,
            19112478-19112577,19112672-19112824,19112896-19114026,
            19114621-19114731,19114829-19114991,19115364-19115458,
            19115613-19115804,19115929-19116069
          Length = 1023

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 342  KAQMEYDEIDKLYDECLEYL 401
            + +ME D I+K +DEC+ +L
Sbjct: 942  RCEMEVDRIEKQFDECVVFL 961


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,250,825
Number of Sequences: 37544
Number of extensions: 122631
Number of successful extensions: 321
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)