Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32053
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical pr... 31 0.64
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 30 1.1
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 2.0
AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing... 29 2.0
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 2.0
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 2.0
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 2.0
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 27 6.0
>Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical
protein F42A8.3 protein.
Length = 322
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 79 CEENYLNYKHFDRVTKTI-QVFSELN*KCFFCSLHNVAIDYSD--SKEQTSD 225
C +NY+N+K F+ TK + V+S N C N + YS SK TS+
Sbjct: 73 CFQNYINFKQFEYETKNLNNVYSLDNRTCSQVIYDNYLLSYSTDISKALTSE 124
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 249 PNPNLKVLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEIDKLYDECL 392
PN + + L+R+ E K + + KD + M YDE K +ECL
Sbjct: 272 PNTDPRTLSRKLYLIFEEKCLSPSPDCKDRITNDMSYDEYAKFSEECL 319
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 312 LNNSMEKDSLKAQMEYDEI-DKLYDECLEY 398
L N + +D LKA EY+EI + + DEC +Y
Sbjct: 402 LMNMVTEDELKADDEYEEILEDVRDECSKY 431
>AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing
factor protein 1,isoform b protein.
Length = 143
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 312 LNNSMEKDSLKAQMEYDEI-DKLYDECLEY 398
L N + +D LKA EY+EI + + DEC +Y
Sbjct: 49 LMNMVTEDELKADDEYEEILEDVRDECSKY 78
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 312 LNNSMEKDSLKAQMEYDEI-DKLYDECLEY 398
L N + +D LKA EY+EI + + DEC +Y
Sbjct: 402 LMNMVTEDELKADDEYEEILEDVRDECSKY 431
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 312 LNNSMEKDSLKAQMEYDEI-DKLYDECLEY 398
L N + +D LKA EY+EI + + DEC +Y
Sbjct: 377 LMNMVTEDELKADDEYEEILEDVRDECSKY 406
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 312 LNNSMEKDSLKAQMEYDEI-DKLYDECLEY 398
L N + +D LKA EY+EI + + DEC +Y
Sbjct: 380 LMNMVTEDELKADDEYEEILEDVRDECSKY 409
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 121 LLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQRVI 11
LL+ N+ L + ++ LF+F Y CVL+ VI
Sbjct: 335 LLFGNILTLRSAFDYILMRLFRFWPAYIVCVLFMYVI 371
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 121 LLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQRVI 11
LL+ N+ L + ++ LF+F Y CVL+ VI
Sbjct: 335 LLFGNILTLRSAFDYILMRLFRFWPAYIVCVLFMYVI 371
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 121 LLYQNVYNLSNFLHNPILSLFKFNKIYRACVLYQRVI 11
LL+ N+ L + ++ LF+F Y CVL+ VI
Sbjct: 335 LLFGNILTLRSAFDYILMRLFRFWPAYIVCVLFMYVI 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,953,496
Number of Sequences: 27780
Number of extensions: 134856
Number of successful extensions: 445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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