Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32053
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 243 KTPNPNLKVLNRRKNKEMEAKDILNNSMEKDSLKAQMEYDEIDKLYDECLEYLKEAKIDV 422
           +T + NL++  R K+  +E   +L N+          +Y E+ K   +    LKE + ++
Sbjct: 464 ETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEI 523


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 354 EYD-EIDKLYDECLEYLKEAKIDV 422
           +YD  ++K  D+CL+ +KE   D+
Sbjct: 414 KYDCTLEKSQDDCLKAIKENNADL 437


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 354 EYD-EIDKLYDECLEYLKEAKIDV 422
           +YD  ++K  D+CL+ +KE   D+
Sbjct: 414 KYDCTLEKSQDDCLKAIKENNADL 437


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 354 EYD-EIDKLYDECLEYLKEAKIDV 422
           +YD  ++K  D+CL+ +KE   D+
Sbjct: 414 KYDCTLEKSQDDCLKAIKENNADL 437


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 246 TPNPNLKVLNRRKNKEMEAKDILNNSMEK 332
           T NP LK+L     K + A++ ++  +EK
Sbjct: 154 TVNPELKLLQYDIGKPVVAEETVDYMLEK 182


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 282 KNKEMEAKDILNNSMEKDSLKA--QMEYDEIDKLYDECLEYLKEAKID 419
           +N   +A    N  +   SLK   ++EY+ +   YD C+       +D
Sbjct: 18  RNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRDAYDNCITVCNMENVD 65


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 242 NLYHDASLVCSLES 201
           N+Y DA +VC++ S
Sbjct: 310 NVYKDALIVCTVNS 323


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 242 NLYHDASLVCSLES 201
           N+Y DA +VC++ S
Sbjct: 363 NVYKDALIVCTVNS 376


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 255 PNLKVLNRRKNK 290
           PNL++LN  +NK
Sbjct: 502 PNLQILNLARNK 513


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +3

Query: 264 KVLNRRKNKEMEAK 305
           +VLN++++K+ EAK
Sbjct: 135 EVLNKKRSKKAEAK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,128
Number of Sequences: 438
Number of extensions: 1626
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)