Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32048
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 0.79
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 4.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 4.2
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 5.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 5.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 7.3
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 24 7.3
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 24 7.3
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 24 9.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 24 9.7
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 0.79
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +1
Query: 118 RYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 297
R+ +S F+ T D GS + + N++ + K SG++YL
Sbjct: 67 RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126
Query: 298 NYSPP 312
+ PP
Sbjct: 127 SRIPP 131
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 10 VLRDTKCIKLTTQRSATIKMFVTRQIASRFFQQTVRRYHGESHFKP-PTMDELPVPKGSW 186
+L D+K ++ +R AT+ ++ +Q + T + H +F P +D++ K SW
Sbjct: 287 LLIDSKVVQTVLER-ATLLVYTRKQ--QHIVKNT--KVHDNDYFSSIPNVDDIRSIKNSW 341
Query: 187 QSHHD 201
+ HD
Sbjct: 342 KVFHD 346
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 91 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 180
+R FQ + RY E KP ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = -3
Query: 215 RRWLASWCD--CHEPLGTGNSSMVGG 144
RRWL CH +G GN S GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 160 HPWWGA*SDFRHGSDALF 107
+P+W SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 155 WMNYQCPKAHGSRT 196
WM CPK HG T
Sbjct: 484 WMKTTCPKCHGPAT 497
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 10 VLRDTKCIKLTTQRSATIKMFVTRQIASRF 99
+++DT C+K+ T +K F + S F
Sbjct: 6 LVKDTSCLKVRTSYKCFVKYFPKCSVQSSF 35
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 100 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 228
F+ +R Y+G +K T+D+L V + Q HH + ++ V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 101 KNLDAIWRVTNIFIVALLCVVSFIHFVSRST 9
K +D +WR + ++ ++ C ++ + VS ST
Sbjct: 397 KKID-LWRPFSFWLFSIFCTIAAYYLVSSST 426
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 98 SSNKQCVATMAKVTSSPPPWMNYQCP 175
SS+ +T + + PPW+NY P
Sbjct: 140 SSSSAVSSTSSSFDRTSPPWLNYVEP 165
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +1
Query: 34 KLTTQRSATIKMFVTRQIASRFFQQTVRRYH 126
KL ++ + +F+T + +R F +++ YH
Sbjct: 1334 KLVAWATSIVNVFITPLVKARTFPESLTTYH 1364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,997
Number of Sequences: 5004
Number of extensions: 26568
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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