Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32048
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   1.6  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   1.6  
AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor ...    27   4.8  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 201  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 323
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 201  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 323
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor
           associated proteinfamily protein 2 protein.
          Length = 96

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 91  SRFFQQTVRRYHGESHFKPP-TMDELPVPKGSWQSHHDANQRRFNAVL 231
           SRF Q+     H  ++  PP T D +PVP  S++  +   Q +FN  L
Sbjct: 13  SRFAQKRHGHGHHVANPGPPCTFDLMPVPFQSYKKVYGELQGKFNTYL 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,675,164
Number of Sequences: 27780
Number of extensions: 160214
Number of successful extensions: 479
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)