Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32048
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   2.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   8.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   8.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   8.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 132 FAMVATHCLLEESRCNLA 79
           + + A HC+++E+   LA
Sbjct: 197 YVLTAAHCIIDENTTKLA 214


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/33 (18%), Positives = 18/33 (54%)
 Frame = +1

Query: 109 TVRRYHGESHFKPPTMDELPVPKGSWQSHHDAN 207
           T+  + G  +F      E+P+ +  W++ ++++
Sbjct: 321 TLLEFAGVHYFTKVGSGEIPLEEEEWENENESD 353


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 77  VTNIFIVALLCVVSFIHFVSRSTH 6
           + + F + +  VV  +HF S  TH
Sbjct: 312 ILDTFSICVTVVVLNVHFRSPQTH 335


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 113 TVCWKNLDAIWRVTNIFIVALLCVVSFI 30
           TV WK  D + R+   F +  L + SF+
Sbjct: 101 TVSWKAGDVMCRIMAFFRMFGLYLSSFV 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,146
Number of Sequences: 438
Number of extensions: 1919
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)