Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32042
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41531-1|AAR85903.1|  210|Caenorhabditis elegans Hypothetical pr...    31   0.83 
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    30   1.4  
U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>U41531-1|AAR85903.1|  210|Caenorhabditis elegans Hypothetical
           protein T07D1.5 protein.
          Length = 210

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 542 DFNDRTDQNFKLLHLNFILIQHRGRKPSCRIRHEARTTNKYNERILLSMC 393
           DFND +D N +  +++F ++ +  + P C  + E       N   ++S+C
Sbjct: 18  DFNDSSDINSRKQNIHFSILFYEFKDPKCAQKTEFLCDQMVNVSFVISVC 67


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 ISKTK*MVFILKVFSSTWKAKFVRYTCWSY 436
           +SKTK M+FIL +F  T+   F  Y C  Y
Sbjct: 117 LSKTKYMIFILWMFELTFALCFYEYLCHFY 146


>U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical
           protein T17E9.2c protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 445 CRIRHEGLRPRCWIKIKFKCRSLKF*SVRSLKSYMI*VQT 564
           CR  H  L PR  I ++F   S K    R++K Y +  +T
Sbjct: 200 CRYYHRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPEET 239


>U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical
           protein T17E9.2b protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 445 CRIRHEGLRPRCWIKIKFKCRSLKF*SVRSLKSYMI*VQT 564
           CR  H  L PR  I ++F   S K    R++K Y +  +T
Sbjct: 249 CRYYHRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPEET 288


>U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical
           protein T17E9.2a protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 445 CRIRHEGLRPRCWIKIKFKCRSLKF*SVRSLKSYMI*VQT 564
           CR  H  L PR  I ++F   S K    R++K Y +  +T
Sbjct: 247 CRYYHRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPEET 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,548
Number of Sequences: 27780
Number of extensions: 170635
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)