Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32041
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1324 + 32659752-32661972,32662067-32662761 33 0.097
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 31 0.69
04_03_0446 - 16012926-16013042,16013266-16013469 30 1.2
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 1.6
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314 28 3.7
01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328 28 3.7
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 27 6.4
10_01_0073 - 955746-955758,955811-956832 27 8.5
10_01_0072 - 918323-918335,918388-919409 27 8.5
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 8.5
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 8.5
04_03_0719 + 19006730-19007440 27 8.5
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 27 8.5
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 33.5 bits (73), Expect = 0.097
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 200 EHLDRETKQDPADSPVH--HHRVATQSFLEM-ERGPAAEHRTPSVAEKLMDHMADKFTDS 370
EH + AD+ VH HR + S E P+ EHR SV+ A TDS
Sbjct: 396 EHRQLSMSLNDADTEVHGGEHRRLSMSLNEAGTEQPSGEHRQLSVSSS----DAGSSTDS 451
Query: 371 ESDADTVGESP 403
SD+DT G P
Sbjct: 452 TSDSDTPGGDP 462
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 30.7 bits (66), Expect = 0.69
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 ETKQDP-ADSPVHHHRVATQSFLEMERGPAAEH-RTPSVAEKLMDHMADKFTDSESDADT 388
E ++D ADSP T S L+ME GP+A H T + K D D F D + D
Sbjct: 267 EAEEDMFADSPKDK---TTASLLDMEPGPSAAHTSTTTTTSKEDDSDFDMFGDDDDKTDV 323
Query: 389 VGES 400
+S
Sbjct: 324 KRDS 327
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 276 SWRWNVGPQRNIGRLPSPKSLW 341
SWRW GR PSP+ +W
Sbjct: 46 SWRWRQAEGSPAGRSPSPRQIW 67
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 361 KFVGHVVHKLFGDGRRPMFRCGPTFHLQETLSGH 260
K+ HV+ LF D CG F L+E LS H
Sbjct: 879 KYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVH 912
>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
Length = 261
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 311 RTPSVAEKLMDHMADKFTDSESDADTVGE 397
R S A ++DH DKF ++ S+A+ +GE
Sbjct: 166 RLTSDAISVIDHKLDKFIEASSNAEKMGE 194
>01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328
Length = 115
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 420 GSGRWRGDSPTVSASDSLSVNL-SAMWSISFSATEGVR 310
G G WRG T S+ L+ +L S+ S SF T+ ++
Sbjct: 69 GKGEWRGTKTTSSSGSRLASSLVSSAGSRSFCGTQSIK 106
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 272 SEWPRDDGVPVNPPGLV 222
S WP DD P+N PG +
Sbjct: 1140 SSWPEDDKEPLNAPGYI 1156
>10_01_0073 - 955746-955758,955811-956832
Length = 344
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 329 RRRKASDVPLRAHVPSPRNSEWPRDDGVPVNPP 231
++R+ P P+ S PR+DG P N P
Sbjct: 191 KKRQQGRQPKVPRAKKPKKSAAPREDGAPPNAP 223
>10_01_0072 - 918323-918335,918388-919409
Length = 344
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 329 RRRKASDVPLRAHVPSPRNSEWPRDDGVPVNPP 231
++R+ P P+ S PR+DG P N P
Sbjct: 191 KKRQQGRQPKVPRAKKPKKSAAPREDGAPPNAP 223
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 234 RIHRYTIIAWPLRVSWRWNVGPQRNIGRLPSPKSLWTTWPTNLPTVSQTPIL*ESRPSIG 413
R+++ I W +V R V QR+ P PK + T P N + + RP+
Sbjct: 80 RVYQEKIAKWQTQVEERLRVLGQRSGAAAPVPKKVVTNNPVNRNDRAASTSF--HRPTSQ 137
Query: 414 PSRGSNSRSLALRHR 458
PS N A H+
Sbjct: 138 PSPTFNRGGQASSHQ 152
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 191 DDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRTPSVAEKLMDHMADKFTDS 370
DD E LD + DS + + S ++ E + ++EKL D +D+ +D
Sbjct: 542 DDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDD--SDEGSDQ 599
Query: 371 ESDAD 385
+ D+D
Sbjct: 600 DDDSD 604
>04_03_0719 + 19006730-19007440
Length = 236
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 414 GRWRGDSPTVSASDSLSVNLSAMWSISFSATEGVRCSAA 298
GR+ GD +AS SV+ AM +++ +A+ CS+A
Sbjct: 126 GRYDGDDHHDAASSVSSVDAGAMAAMAAAASSNSSCSSA 164
>01_06_1097 + 34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/89 (20%), Positives = 35/89 (39%)
Frame = +2
Query: 161 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRTPSVAEKLM 340
+ + DQ D H+D T A+S + ++++ F M+ EH S +
Sbjct: 972 EATRSDQQMPDVDSHIDNNTSNGVAESSLISPQISSNIFSNMKYASMLEHEENSPLVDDL 1031
Query: 341 DHMADKFTDSESDADTVGESPLHRPEPRV 427
+ +F S + E ++ P R+
Sbjct: 1032 NGTGPEFGWSLGASYDDPEQTVYNPRRRI 1060
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,895
Number of Sequences: 37544
Number of extensions: 303052
Number of successful extensions: 991
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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