Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32041
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 173  RDQDSTDDFEHLDRETKQ 226
            RD+DST D   LDR +++
Sbjct: 1409 RDEDSTRDSTKLDRSSRE 1426


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 281 PRNSEWPRDDGVPVNP-PGL 225
           P N +W   DG PVN  PG+
Sbjct: 59  PLNIDWSTADGHPVNDVPGV 78


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 281 PRNSEWPRDDGVPVNP-PGL 225
           P N +W   DG PVN  PG+
Sbjct: 59  PLNIDWSTADGHPVNDVPGV 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +2

Query: 254  HRVATQSFLEMERGPAAEHRTPSVAEKLMDHMADKFTDSESDADTVGESPLHRP 415
            + V  Q+F ++  GP +E R    AE + +      T +   + T+  S +  P
Sbjct: 1053 YSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWMSPP 1106


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 301 CGPTFHLQETLSGHAMMVY 245
           C  T+     LSG+A++VY
Sbjct: 184 CDNTYAYISDLSGYALVVY 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,849
Number of Sequences: 438
Number of extensions: 2703
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)