Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32040
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 27 0.71
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.2
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 1.6
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 24 6.7
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 24 6.7
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 8.8
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 24 8.8
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb... 24 8.8
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 24 8.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 24 8.8
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 0.71
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +3
Query: 147 IPPTFAMYEALKDSCQN----NATFFKPDDTENGQRLY 248
I P + + LKD+ Q +AT++ P DT+NG++ Y
Sbjct: 11 ILPIKGVLQKLKDNAQKTVLLDATWYLPTDTKNGKKEY 48
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.6 bits (56), Expect = 1.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 355 FPGDFVSKSYCGATFRTWSTRGHTVSI 275
FP V+ Y G++ W+ RGH ++
Sbjct: 1164 FPWKLVTHDYTGSSSSEWAVRGHKENV 1190
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 358 PFPGDFVSKSYCGATFRTWSTRGHTVSIWS 269
PFP +F C A +R + GH VS+W+
Sbjct: 1798 PFPIEFK----CDAPYRIHNYTGHAVSVWA 1823
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 162 AMYEALKDSCQNNATFFKPDDTENGQRLYQG 254
A+ EAL + + + +F D ENGQ L QG
Sbjct: 459 ALLEALANMNREDPSFRYTQDLENGQLLIQG 489
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 115 ALAGGSENSIILSVLEANRTPRVMNLSLIVC 23
+L G++ S++ + L R MN+ L VC
Sbjct: 665 SLVNGADFSVVQAFLRIRRMLATMNVQLCVC 695
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 157 VGGIPSLLSAQQYEALAGGSENSIILSVLEAN 62
+GGIPS+L E L GS ++ L N
Sbjct: 358 IGGIPSVLKYLHAEGLIDGSNITVTGKTLAEN 389
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 137 QRWYSTNFRYV*SAKRLLSEQRDILQTGRYRKR 235
QR YS NF+ + L E ++ +T + RKR
Sbjct: 90 QRLYSDNFQEAQRQWKRLQEWGEVKETKKIRKR 122
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 96 SDPPASASYCCAESNDGIPPTFAMYEALKDSC 191
SDP + ++ C ++ +P T + LK SC
Sbjct: 58 SDPRSESNSCNGNTSSSLPCTDSYQYPLKHSC 89
>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +3
Query: 99 DPPASASYCCAESNDGIPPTFAMYEALKDSCQNNATFF 212
DPP + + N I YE +KD C+ +F
Sbjct: 168 DPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYF 205
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 207 FFKPDDTENGQRLYQGFMT 263
FF P DT+NG L G+MT
Sbjct: 245 FFNPHDTKNGS-LKIGYMT 262
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 112 LAGGSENSIILSVLEANRT 56
+A GSE IILS++E +T
Sbjct: 485 IANGSERIIILSLIELRKT 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,549
Number of Sequences: 5004
Number of extensions: 33242
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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