Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32038
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   2.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 634 LQHTCSQY---CA-KQYVNVFSIYLKNFEY 711
           L H C QY   CA  Q+  VF +YLKN+ +
Sbjct: 889 LSHRCFQYMVLCAIVQFSGVFFLYLKNYNF 918


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 419 NNKYREIKDRVRIYVFFKVICESEDFVRILTLF--LKMFHKNDC 294
           N  +R +K    I +    + E  DF+RI TLF  + MF K DC
Sbjct: 138 NGLFRFLKCTADIKLKQTKVYEGADFLRIKTLFEEIFMFLKRDC 181


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 158 LTCDIFNINHLCNIYFLFFT 99
           L+  +F+I+HL + +FLFF+
Sbjct: 166 LSHSLFHISHLISFHFLFFS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,824
Number of Sequences: 5004
Number of extensions: 54941
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)