Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32036
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 55 3e-08
01_06_0663 - 30991390-30992340 54 6e-08
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 48 5e-06
05_07_0134 - 27911920-27912762 44 6e-05
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 2e-04
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 40 8e-04
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 1.4
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 2.5
04_01_0035 - 433848-434372,434905-435381 29 2.5
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 3.3
11_06_0743 + 26847652-26849424 28 4.4
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 7.6
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 7.6
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 27 7.6
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 54.8 bits (126), Expect = 3e-08
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +2
Query: 47 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNA 214
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLAR 361
Query: 215 AAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLD-VYLGKDGVXAHAKKGSLLIDSSTID 391
G +S I+ +N+V + V G G + G+ +I SST+
Sbjct: 362 FTDLGGLTKDS-PEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
Query: 392 PN-VAKQILPIALE-KGLGFTDAPVSGG 469
P V K + E + + DAPVSGG
Sbjct: 421 PGFVIKLKERLEAECRDIKLVDAPVSGG 448
>01_06_0663 - 30991390-30992340
Length = 316
Score = 54.0 bits (124), Expect = 6e-08
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +2
Query: 77 RAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXX 256
R S +T + VA++G G MG MA +L+ G+ + Y+ + G T A S
Sbjct: 13 RPISPDTTR-VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRA 71
Query: 257 XXXXXXXXXSILTSNKVVLDVYLGKD-GVXAHAKKGSLLIDSSTIDPNVAKQILPIALEK 433
++ V L G A G LL+D +T DP +A +I A K
Sbjct: 72 AAAAADVIFLMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 434 GLGFTDAPVSGG 469
DAPVSGG
Sbjct: 132 SCAAVDAPVSGG 143
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 47.6 bits (108), Expect = 5e-06
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 12/121 (9%)
Frame = +2
Query: 143 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 322
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 323 LGKDGVXAHAK-KGS-LLIDSSTIDPNVAKQI-LPIA---LEKGLGFT------DAPVSG 466
G++G+ A+ G L IDSST+DP +++I + I+ L++ + DAPVSG
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSG 120
Query: 467 G 469
G
Sbjct: 121 G 121
>05_07_0134 - 27911920-27912762
Length = 280
Score = 44.0 bits (99), Expect = 6e-05
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +2
Query: 143 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 322
MAA L+ GF V Y + A G + A S +++ + V V
Sbjct: 1 MAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVV 60
Query: 323 L-GKDGVXAHAKKGSLLIDSSTIDPNVAKQILPIALEKGLGFTDAPVSGG 469
L GV A + G +L+D ++ P++A+++ A G D+PVSGG
Sbjct: 61 LDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGG 110
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect(3) = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 107 VAFLGLGNMGGFMAANLVKKGFTV 178
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 25.4 bits (53), Expect(3) = 2e-04
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 299 NKVVLDVYLGKDGVXAHAKKGSLLIDSSTIDPNVAKQILPI 421
N+ + V KDGV +G +D ST+D + +I I
Sbjct: 30 NRTLSKVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEI 70
Score = 21.0 bits (42), Expect(3) = 2e-04
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 428 EKGLGFTDAPVSG 466
+KG F +APVSG
Sbjct: 110 QKGGAFVEAPVSG 122
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 40.3 bits (90), Expect = 8e-04
Identities = 33/140 (23%), Positives = 55/140 (39%)
Frame = +2
Query: 32 ARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 211
AR + S C +++ + V FLGLG MG MA+NL+ G V ++ ++ +
Sbjct: 30 ARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCD 87
Query: 212 AAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVYLGKDGVXAHAKKGSLLIDSSTID 391
G S ++L + ++V G +G G +D ST+D
Sbjct: 88 PLLSLGAKYEPSPADVASSCDVTFAMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVD 147
Query: 392 PNVAKQILPIALEKGLGFTD 451
+K I G F +
Sbjct: 148 AATSKLIGKHITSTGASFLE 167
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 143 MAANLVKKGFTVRGYDPSKDALN 211
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 356 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 237
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 28.7 bits (61), Expect = 2.5
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = +2
Query: 68 AARRAY---SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTP 238
AAR Y S + K+V +GLG++G +A L G T+ Y+ S+ ++ + N
Sbjct: 149 AARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTI-SYN-SRRPKDSVSYNYFPD 206
Query: 239 ANSIXXXXXXXXXXXSILTSNKVVLDVY----LGKDGVXAHAKKGSLLIDSSTI 388
+ ++ + ++D LGKDGV + +G ++ ++ I
Sbjct: 207 VTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELI 260
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 107 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 235
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 308 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 207
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 96 PTRMWLSSASETWEDSWLRTWL 161
P R W AS ED+W R W+
Sbjct: 370 PLRRWWRRASYFLEDNWRRVWV 391
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 332 LCPGTRRARLYCWSIWKRPRRLHQRLQQWSWLASLRSWPLRSVHL-WK 192
L T L C ++ + PRRL R + WS + ++P+ ++ + W+
Sbjct: 148 LSTATCEVSLPCATMVRMPRRLRWRSEPWSHMWPRMTFPIATLEIRWR 195
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 178 SRLRSFQRCTERSGQERSDASQLHCCSR*WSRRGRFHIDQQ*SRARRVPGQRWRXGSCEK 357
SRLR QRC E ER++A +L ++Q+ +AR++ W+ K
Sbjct: 764 SRLRPDQRCLENGEYERANAEKL-------------RLEQRQRQARKMQESGWKPRWFAK 810
Query: 358 RIASDRFEY 384
A+D + Y
Sbjct: 811 DKATDTYRY 819
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,750
Number of Sequences: 37544
Number of extensions: 315793
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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