Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32031
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   1.7  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   3.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   3.0  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   3.9  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    24   6.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    24   9.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   9.1  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 210 PSPWMSIVNAWDSNTVASLNTNAPDVSSLI 121
           P+P    VN  D + +ASL+   PD+ SL+
Sbjct: 303 PTPPFGAVNRRDHHYIASLHAWKPDLRSLV 332


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = -3

Query: 370 QRLPHPSNRNALQLHGRNRRVVIPTRVDSQEVLPPVIRQIV 248
           Q +P P+  N+++ H R   +V+ +RVD  ++   +++ ++
Sbjct: 113 QIIPEPTISNSIESHLRKCLMVLLSRVDEIDLADVLVKTVL 153


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 226 ITRCYSFTVDVNRERLGFEYRCIAQHECTGRLIPYTTT 113
           + R Y F + V+RER+GF  +  A       +I  TTT
Sbjct: 654 LNRLYRFYLKVDRERIGFSNKRAAILLRGANVIGMTTT 691


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = -3

Query: 373 LQRLPHPSNRNALQLHGRNRRVVIPTRVDSQEVLPPVIRQIVIIAGLIFITRCYSFTVDV 194
           L R PH    N  +L  + +   +  ++DS+E + P + ++++     F+    +F   +
Sbjct: 328 LSRAPHYELDNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRL 387

Query: 193 NRER 182
            + R
Sbjct: 388 AKHR 391


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 95  KYTPICRRGIRDETSGA--FVLSDATVF 172
           +YTP  R G+ DE  GA  ++ SDA+ +
Sbjct: 213 EYTPQARIGLPDELPGAYLYLASDASSY 240


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 292 VDSQEVLPPVIRQIVIIAGLIF--ITRCYSFTVDVN 191
           ++  EVLPPV  + V+    +F  +  C  F + +N
Sbjct: 77  LEQNEVLPPVKNESVLFLEKVFNAVDICVKFHLSIN 112


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 29  ANASYPLSFKLLKTDTK*MHYLKYTPICRRGIRDETSGAFVLSDATVFESQAFTIDI 199
           +N +Y  SFK +    +   YLK   +    +RD+     V+  +T    Q    DI
Sbjct: 697 SNGTYKASFKNVHVVLRSFTYLKEDEMLVASVRDDIVSEAVVGFSTDNNGQKILADI 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,929
Number of Sequences: 5004
Number of extensions: 29789
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)