Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32031
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881...    30   0.69 
04_04_0500 - 25677767-25680850                                         27   3.7  
01_01_1106 + 8750597-8754031                                           27   4.9  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    26   8.6  

>11_06_0529 +
           24687027-24687064,24687150-24687610,24687709-24688124,
           24688688-24688860,24689733-24689868,24689914-24690264,
           24691170-24691344,24691761-24691822
          Length = 603

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 204 PWMSIVNAWDSNTVASLNTNAPDVSSLIPR 115
           PW  +  AW S T+  L + AP +SS + R
Sbjct: 85  PWKGVAEAWRSRTMRRLPSLAPTMSSTLRR 114


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 67  DRHKINALLKIHSYMSSWYKG*DVRCIRVERCNGIRI 177
           D     ++L   +Y+SS+Y G  V C+ ++ C  I +
Sbjct: 425 DEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISL 461


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 210 PSPWMSIVNAWDSNTVASLNTNAPDVSSLIPRRHI 106
           PS  M  + +W  N V+   +N P+ S L P RHI
Sbjct: 859 PSWMMKSMESWLPNLVSLDLSNIPNCSCLPPLRHI 893


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 AAPPFKPKRITASRQK*AGG 306
           A PP +PKR+   R+K AGG
Sbjct: 82  APPPPQPKRLQGGRKKGAGG 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,360,235
Number of Sequences: 37544
Number of extensions: 203928
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)