Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32031
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    27   4.5  
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical ...    27   5.9  

>Z77666-3|CAB01225.1|  698|Caenorhabditis elegans Hypothetical
           protein K08E7.3 protein.
          Length = 698

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 150 C*AMQRYSNPRRSRLTSTVKE*HRVIKIKP-AIITICLITGGRTSCESTRVGITTRL 317
           C    RYS PR +++T +  +    +  KP A   +        +CE T+ G+ TRL
Sbjct: 639 CEEKDRYSGPRYAKITRSRNDWQPPVPDKPQASPAVFKKPLREVACEKTKKGLFTRL 695


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 222 HDVIP-SPWMSIVNAWDSNTVASLNTNAPDVSSLIPRRHIG 103
           H  +P S W  I   W S +    N++ P+ + L+ R   G
Sbjct: 313 HQRLPGSVWRGIAQRWSSTSSKKKNSDEPEQAELLQRNGAG 353


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 168 YSNPRRSRLTSTVKE*HRVIKIKPA 242
           +S PRRSRL + + +  R I I+PA
Sbjct: 50  HSRPRRSRLDNDIPQPRRPILIQPA 74


>AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical
           protein C47F8.8 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 238 GLIFITRCYSFTVDVNRERLGFEYRCIAQHECT 140
           G+I  T C +F     R  +G +Y C A++ CT
Sbjct: 25  GIISCTACAAFF----RRSIGMQYLCTAENRCT 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,752,033
Number of Sequences: 27780
Number of extensions: 173094
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)